Sodium in PDB 6jdp: The IMM52 Family Protein Tsit (PA3908) From Pseudomonas Aeruginosa

The structure of The IMM52 Family Protein Tsit (PA3908) From Pseudomonas Aeruginosa, PDB code: 6jdp was solved by Z.She, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.74 / 1.60
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	86.960, 86.960, 81.108, 90.00, 90.00, 120.00
R / Rfree (%)	18.7 / 22

The binding sites of Sodium atom in the The IMM52 Family Protein Tsit (PA3908) From Pseudomonas Aeruginosa (pdb code 6jdp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The IMM52 Family Protein Tsit (PA3908) From Pseudomonas Aeruginosa, PDB code: 6jdp:

Sodium binding site 1 out of 1 in the The IMM52 Family Protein Tsit (PA3908) From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The IMM52 Family Protein Tsit (PA3908) From Pseudomonas Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:45.4 occ:1.00 O3 A:PO4301 2.5 43.8 1.0 O A:SER62 2.8 28.2 1.0 O4 A:PO4301 3.2 45.1 1.0 O A:HOH504 3.2 31.9 1.0 P A:PO4301 3.4 43.6 1.0 O1 A:PO4301 3.9 44.1 1.0 C A:SER62 4.0 25.3 1.0 CD2 A:HIS68 4.2 37.9 1.0 NE2 A:HIS68 4.2 39.6 1.0 O2 A:PO4301 4.7 48.5 1.0 O A:HOH462 4.8 40.9 1.0 CA A:SER62 4.8 22.9 1.0 ND1 A:HIS63 4.8 31.9 1.0 N A:HIS63 4.9 23.4 1.0 CA A:HIS63 4.9 21.3 1.0

Z.She, Z.Geng, J.H.Xu, Y.H.Li, Y.H.Dong. Structural Characterization of the IMM52 Family Protein Tsit in Pseudomonas Aeruginosa. Protein Sci. V. 28 971 2019.
ISSN: ESSN 1469-896X
PubMed: 30834616
DOI: 10.1002/PRO.3597