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Sodium in PDB 6is4: Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain

Protein crystallography data

The structure of Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain, PDB code: 6is4 was solved by Y.Wen, Z.Ouyang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.69 / 1.85
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.928, 66.928, 153.057, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 21.7

Other elements in 6is4:

The structure of Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain (pdb code 6is4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain, PDB code: 6is4:

Sodium binding site 1 out of 1 in 6is4

Go back to Sodium Binding Sites List in 6is4
Sodium binding site 1 out of 1 in the Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na303

b:30.2
occ:1.00
H A:GLU147 2.3 36.9 1.0
HZ2 A:LYS198 2.8 40.4 1.0
O A:HOH420 3.1 30.4 1.0
HA A:ILE146 3.1 36.5 1.0
HZ3 A:LYS198 3.1 40.4 1.0
O A:HOH427 3.1 49.1 1.0
N A:GLU147 3.2 30.5 1.0
HG23 A:ILE146 3.2 40.4 1.0
HD2 A:LYS198 3.3 33.9 1.0
NZ A:LYS198 3.4 33.4 1.0
HB2 A:GLU147 3.5 35.9 1.0
HG3 A:GLU147 3.8 41.1 1.0
HD3 A:LYS198 3.8 33.9 1.0
CA A:ILE146 3.9 30.2 1.0
O A:GLU147 3.9 30.3 1.0
CD A:LYS198 3.9 28.0 1.0
CG2 A:ILE146 4.0 33.4 1.0
HZ1 A:LYS198 4.0 40.4 1.0
C A:ILE146 4.0 34.9 1.0
HG22 A:ILE146 4.1 40.4 1.0
CA A:GLU147 4.1 30.1 1.0
CB A:GLU147 4.1 29.6 1.0
O A:HOH490 4.1 49.9 1.0
HE2 A:TYR202 4.1 52.0 1.0
O A:HOH459 4.2 47.4 1.0
CE A:LYS198 4.3 31.6 1.0
CG A:GLU147 4.4 34.0 1.0
HG12 A:ILE146 4.4 46.9 1.0
C A:GLU147 4.4 25.1 1.0
CB A:ILE146 4.5 33.0 1.0
O A:GLU145 4.5 39.8 1.0
OE1 A:GLU147 4.5 75.4 1.0
O A:HOH481 4.6 45.4 1.0
HH A:TYR202 4.7 78.6 1.0
HG21 A:ILE146 4.8 40.4 1.0
HE3 A:LYS198 4.8 38.3 1.0
CD A:GLU147 4.9 62.1 1.0
HA A:GLU147 5.0 36.5 1.0
HE2 A:LYS198 5.0 38.3 1.0
HB3 A:GLU147 5.0 35.9 1.0
HB3 A:LYS198 5.0 33.3 1.0

Reference:

Y.Wen, Z.Ouyang. Crystal Structure of Staphylococcus Aureus Response Regulator Arlr Dna Binding Domain To Be Published.
Page generated: Mon Aug 18 05:31:44 2025

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