Sodium in PDB 6i8y: Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366

The structure of Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366, PDB code: 6i8y was solved by V.Srikannathasan, C.Johansson, C.Gileadi, L.Shrestha, F.J.Sorrell, T.Krojer, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, A.Edwards, U.C.T.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	82.15 / 1.52
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	116.170, 116.170, 43.630, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 20.5

The binding sites of Sodium atom in the Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366 (pdb code 6i8y). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366, PDB code: 6i8y:

Sodium binding site 1 out of 1 in the Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na308 b:35.5 occ:1.00 OE1 A:GLN217 2.2 35.1 0.5 NE2 A:GLN269 2.3 30.1 1.0 HE22 A:GLN217 2.3 46.7 0.5 NE2 A:GLN217 2.9 38.9 0.5 CD A:GLN217 2.9 34.2 0.5 HG3 A:GLN217 3.5 36.3 0.5 CD A:GLN269 3.6 32.0 1.0 HE21 A:GLN217 3.7 46.7 0.5 OE1 A:GLN269 4.2 32.4 1.0 CG A:GLN217 4.3 30.2 0.5 CG A:GLN217 4.4 30.2 0.5 HB2 A:GLN217 4.5 29.4 0.5 HB2 A:GLN217 4.6 29.2 0.5 CG A:GLN269 4.6 31.1 1.0 HG3 A:GLN217 4.6 36.3 0.5 HG2 A:GLN217 4.8 36.3 0.5 HG2 A:GLN217 4.9 36.3 0.5 CB A:GLN217 4.9 24.4 0.5 CB A:GLN217 5.0 24.3 0.5

V.Srikannathasan, C.Johansson, C.Gileadi, L.Shrestha, F.J.Sorrell, T.Krojer, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, C.Bountra, A.Edwards, U.C.T.Oppermann. Crystal Structure of SPINDLIN1 in Complex with the Methyltransferase Inhibitor A366 To Be Published.