Sodium in PDB 6gq4: Neisseria Gonorrhoeae Adhesin Complex Protein

The structure of Neisseria Gonorrhoeae Adhesin Complex Protein, PDB code: 6gq4 was solved by C.M.Orr, I.Tews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.88 / 1.65
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	49.092, 30.936, 67.572, 90.00, 103.47, 90.00
R / Rfree (%)	12.5 / 17.9

The binding sites of Sodium atom in the Neisseria Gonorrhoeae Adhesin Complex Protein (pdb code 6gq4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Neisseria Gonorrhoeae Adhesin Complex Protein, PDB code: 6gq4:

Sodium binding site 1 out of 1 in the Neisseria Gonorrhoeae Adhesin Complex Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Neisseria Gonorrhoeae Adhesin Complex Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:27.2 occ:1.00 O A:HOH334 1.6 32.5 0.5 O A:TYR81 2.4 19.2 1.0 O A:GLN84 2.6 15.8 1.0 OH A:TYR15 2.6 13.6 1.0 CE2 A:TYR15 3.4 14.3 1.0 CZ A:TYR15 3.4 12.9 1.0 N A:GLN84 3.5 15.8 1.0 C A:GLN84 3.6 17.0 1.0 C A:TYR81 3.7 16.1 1.0 CG A:PRO102 3.7 25.2 0.5 CB A:GLN84 3.8 16.5 0.5 CA A:GLN84 3.8 17.2 0.5 CA A:GLN84 3.9 17.2 0.5 C A:ARG82 4.1 15.4 1.0 CB A:GLN84 4.1 15.8 0.5 CA A:ARG82 4.1 16.8 1.0 CG1 A:VAL13 4.3 16.8 1.0 CG2 A:ILE86 4.3 13.1 1.0 N A:LYS83 4.3 16.4 1.0 O A:ARG82 4.4 21.1 1.0 N A:ARG82 4.4 14.8 1.0 C A:LYS83 4.4 17.2 1.0 CG A:PRO102 4.5 30.0 0.5 CB A:PRO102 4.5 27.6 0.5 CG2 A:VAL13 4.6 13.9 1.0 OH A:TYR27 4.6 13.3 1.0 CD A:PRO102 4.6 27.3 0.5 CD2 A:TYR15 4.6 16.6 1.0 CB A:VAL13 4.7 14.7 1.0 CE1 A:TYR15 4.7 13.8 1.0 CD A:PRO102 4.7 30.4 0.5 CA A:TYR81 4.7 14.9 1.0 CE A:MET76 4.8 16.5 1.0 CB A:PRO102 4.8 25.4 0.5 N A:PRO85 4.8 17.1 1.0 CG A:GLN84 4.8 17.0 0.5 CE2 A:TYR27 5.0 10.9 1.0 CA A:LYS83 5.0 19.6 1.0

H.L.Almonacid-Mendoza, M.V.Humbert, A.Dijokaite, D.W.Cleary, Y.Soo, M.C.Hung, C.M.Orr, M.M.Machelett, I.Tews, M.Christodoulides. Structure of the Recombinantneisseria Gonorrhoeaeadhesin Complex Protein (Rng-Acp) and Generation of Murine Antibodies with Bactericidal Activity Against Gonococci. Msphere V. 3 2018.
ISSN: ESSN 2379-5042
PubMed: 30305317
DOI: 10.1128/MSPHERE.00331-18