Sodium in PDB 6go7: Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex

All present enzymatic activity of Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex:
2.7.7.31; 2.7.7.7;

The structure of Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex, PDB code: 6go7 was solved by J.Loc'h, C.A.Gerodimos, S.Rosario, M.R.Lieber, M.Delarue, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.99 / 2.55
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.000, 90.310, 65.900, 90.00, 106.79, 90.00
R / Rfree (%)	19.1 / 22.2

The structure of Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Sodium atom in the Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex (pdb code 6go7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex, PDB code: 6go7:

Sodium binding site 1 out of 1 in the Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:35.1 occ:1.00 O A:THR253 2.5 41.0 1.0 O A:VAL255 2.8 35.2 1.0 OP1 E:DG6 2.9 78.3 1.0 O A:VAL258 2.9 40.9 1.0 C A:THR253 3.6 40.3 1.0 C A:VAL255 3.7 34.6 1.0 CA A:PHE256 4.0 30.9 1.0 C A:VAL258 4.0 41.2 1.0 O A:HOH836 4.1 41.2 1.0 N A:VAL258 4.1 35.2 1.0 CA A:THR253 4.1 36.9 1.0 P E:DG6 4.1 77.8 1.0 N A:GLY257 4.2 34.4 1.0 N A:PHE256 4.2 30.5 1.0 OP2 E:DG6 4.5 77.5 1.0 N A:VAL255 4.5 31.5 1.0 C A:PHE256 4.5 37.7 1.0 C A:SER254 4.6 36.7 1.0 CA A:VAL258 4.6 35.9 1.0 CB A:THR253 4.6 37.2 1.0 O E:HOH101 4.7 46.3 1.0 N A:SER254 4.7 35.0 1.0 CA A:VAL255 4.8 29.4 1.0 O A:SER254 4.9 37.1 1.0 CA A:SER254 4.9 33.8 1.0

J.Loc'h, C.A.Gerodimos, S.Rosario, M.R.Lieber, M.Delarue. Tdt Chimera (LOOP1 of Pol Mu) - Full Dna Synapsis Complex To Be Published.