Sodium in PDB 6g35: Crystal Structure of Haspin in Complex with 5-Bromotubercidin

All present enzymatic activity of Crystal Structure of Haspin in Complex with 5-Bromotubercidin:
2.7.11.1;

The structure of Crystal Structure of Haspin in Complex with 5-Bromotubercidin, PDB code: 6g35 was solved by C.Heroven, A.Chaikuad, C.Bountra, C.H.Arrowsmith, A.M.Edwards, S.Knapp, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.87 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	78.301, 78.760, 79.300, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 18.3

The structure of Crystal Structure of Haspin in Complex with 5-Bromotubercidin also contains other interesting chemical elements:

Cobalt	(Co)	1 atom
Bromine	(Br)	4 atoms

The binding sites of Sodium atom in the Crystal Structure of Haspin in Complex with 5-Bromotubercidin (pdb code 6g35). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Haspin in Complex with 5-Bromotubercidin, PDB code: 6g35:

Sodium binding site 1 out of 1 in the Crystal Structure of Haspin in Complex with 5-Bromotubercidin


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Haspin in Complex with 5-Bromotubercidin within 5.0Å range: probe atom residue distance (Å) B Occ A:Na801 b:26.6 occ:1.00 O A:HOH915 2.2 25.6 1.0 O A:PHE556 2.3 19.6 0.5 O A:GLU554 2.3 21.0 1.0 O A:HOH1111 2.3 49.6 1.0 O A:HOH951 2.4 42.0 1.0 OG A:SER684 2.5 20.5 1.0 O A:PHE556 3.2 17.3 0.5 CB A:SER684 3.4 18.1 1.0 C A:PHE556 3.5 16.9 0.5 C A:GLU554 3.5 19.5 1.0 C A:PHE556 3.7 16.4 0.5 C A:GLY555 3.8 16.6 1.0 CA A:SER684 3.9 17.1 1.0 O A:VAL683 3.9 19.5 1.0 N A:PHE556 3.9 15.9 0.5 OE2 A:GLU606 4.0 31.2 1.0 N A:PHE556 4.0 16.1 0.5 CA A:GLY555 4.0 17.4 1.0 N A:GLY555 4.2 17.6 1.0 CA A:ILE557 4.2 17.7 0.5 N A:ILE557 4.2 16.5 0.5 N A:ILE557 4.3 17.2 0.5 CA A:ILE557 4.3 17.4 0.5 O A:GLY555 4.3 17.0 1.0 OE1 A:GLU606 4.3 33.3 1.0 O A:HOH994 4.4 28.4 1.0 CA A:PHE556 4.4 15.6 0.5 CA A:PHE556 4.4 16.0 0.5 CD A:GLU606 4.6 31.2 1.0 N A:SER684 4.6 17.3 1.0 C A:VAL683 4.6 18.0 1.0 CA A:GLU554 4.6 20.3 1.0 NZ A:LYS658 4.7 25.6 0.5 O A:HOH997 4.7 21.6 1.0 CB A:GLU554 4.8 23.0 1.0 CD1 A:ILE557 4.9 20.0 0.5 CD1 A:ILE557 5.0 19.8 0.5 CG A:GLN682 5.0 30.0 1.0 OE1 A:GLN682 5.0 43.0 1.0

C.Heroven, V.Georgi, G.K.Ganotra, P.Brennan, F.Wolfreys, R.C.Wade, A.E.Fernandez-Montalvan, A.Chaikuad, S.Knapp. Halogen-Aromatic Pi Interactions Modulate Inhibitor Residence Times. Angew. Chem. Int. Ed. Engl. V. 57 7220 2018.
ISSN: ESSN 1521-3773
PubMed: 29601130
DOI: 10.1002/ANIE.201801666