Sodium in PDB 6fpd: AB21 Protein From Agaricus Bisporus

The structure of AB21 Protein From Agaricus Bisporus, PDB code: 6fpd was solved by J.Houser, G.Demo, J.Komarek, M.Wimmerova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.96 / 2.50
Space group	P 64
Cell size a, b, c (Å), α, β, γ (°)	73.936, 73.936, 70.592, 90.00, 90.00, 120.00
R / Rfree (%)	24.3 / 31.7

The binding sites of Sodium atom in the AB21 Protein From Agaricus Bisporus (pdb code 6fpd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the AB21 Protein From Agaricus Bisporus, PDB code: 6fpd:

Sodium binding site 1 out of 1 in the AB21 Protein From Agaricus Bisporus


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of AB21 Protein From Agaricus Bisporus within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:38.4 occ:1.00 OD2 A:ASP148 2.2 21.7 1.0 N A:PHE9 3.3 29.1 1.0 CG A:ASP148 3.3 22.6 1.0 CE2 A:TYR180 3.5 20.6 1.0 N A:PRO8 3.5 29.3 1.0 CG2 A:THR144 3.5 21.4 1.0 OH A:TYR180 3.7 19.2 1.0 C A:PHE7 3.7 31.2 1.0 CB A:PHE9 3.7 28.6 1.0 CD A:PRO8 3.7 28.6 1.0 OD1 A:ASP148 3.8 23.1 1.0 CD2 A:PHE9 3.8 26.8 1.0 CG A:PHE9 3.8 27.6 1.0 CZ A:TYR180 3.9 20.4 1.0 CB A:PHE7 3.9 32.4 1.0 CA A:PHE7 4.0 33.1 1.0 CA A:PHE9 4.0 29.6 1.0 C A:PRO8 4.2 29.1 1.0 CA A:PRO8 4.2 28.6 1.0 CB A:PRO8 4.3 28.2 1.0 CD2 A:TYR180 4.3 21.0 1.0 O A:PHE7 4.4 32.1 1.0 CG A:PRO8 4.4 28.4 1.0 CB A:ALA176 4.4 33.2 1.0 CD1 A:PHE7 4.5 31.3 1.0 CE2 A:PHE9 4.6 26.6 1.0 CB A:ASP148 4.6 22.7 1.0 CD1 A:PHE9 4.7 27.0 1.0 CG A:PHE7 4.7 32.3 1.0 C A:PHE9 4.8 31.8 1.0 O A:THR144 4.8 21.7 1.0 N A:ALA10 4.8 34.1 1.0 CE1 A:TYR180 5.0 20.6 1.0

J.Komarek, E.Ivanov Kavkova, J.Houser, A.Horackova, J.Zdanska, G.Demo, M.Wimmerova. Structure and Properties of AB21, A Novel Agaricus Bisporus Protein with Structural Relation to Bacterial Pore-Forming Toxins. Proteins V. 86 897 2018.
ISSN: ESSN 1097-0134
PubMed: 29722060
DOI: 10.1002/PROT.25522