Sodium in PDB 6f58: Crystal Structure of Human Brachyury (T) in Complex with Dna

The structure of Crystal Structure of Human Brachyury (T) in Complex with Dna, PDB code: 6f58 was solved by J.A.Newman, A.E.Gavard, T.Krojer, L.Shrestha, N.A.Burgess-Brown, F.Vondelft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.65 / 2.25
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.978, 37.109, 110.796, 90.00, 103.99, 90.00
R / Rfree (%)	24.2 / 28.8

The binding sites of Sodium atom in the Crystal Structure of Human Brachyury (T) in Complex with Dna (pdb code 6f58). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Human Brachyury (T) in Complex with Dna, PDB code: 6f58:

Sodium binding site 1 out of 1 in the Crystal Structure of Human Brachyury (T) in Complex with Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Human Brachyury (T) in Complex with Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:44.0 occ:1.00 O A:LYS151 2.4 55.5 1.0 OE1 A:GLN157 2.4 44.3 1.0 OG1 A:THR149 2.5 30.2 1.0 O A:LYS66 2.6 35.2 1.0 OD1 A:ASN153 2.7 52.6 1.0 CB A:THR149 3.0 29.9 1.0 CG2 A:THR149 3.1 29.1 1.0 C A:LYS151 3.4 47.4 1.0 CG A:ASN153 3.5 58.3 1.0 CD A:GLN157 3.7 42.5 1.0 N A:ASN153 3.7 57.6 1.0 C A:LYS66 3.8 34.1 1.0 N A:LEU152 4.1 44.6 1.0 ND2 A:ASN153 4.1 62.7 1.0 CA A:LEU152 4.2 51.8 1.0 CA A:LYS151 4.3 40.4 1.0 N A:LYS151 4.4 36.8 1.0 C A:LEU152 4.4 55.0 1.0 CB A:ASN153 4.4 58.9 1.0 NE2 A:GLN157 4.5 44.8 1.0 O A:THR65 4.5 30.2 1.0 CA A:THR149 4.5 28.6 1.0 CA A:ASN153 4.6 62.9 1.0 CB A:LYS151 4.6 38.4 1.0 N A:GLY68 4.6 29.5 1.0 CA A:LYS66 4.6 33.6 1.0 CG A:GLN157 4.6 41.9 1.0 N A:ASN67 4.6 34.0 1.0 C A:ASN67 4.7 34.1 1.0 CB A:GLN157 4.7 37.8 1.0 CA A:ASN67 4.7 35.4 1.0

J.A.Newman, A.E.Gavard, T.Krojer, L.Shrestha, N.A.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, O.Gileadi. Crystal Structure of Human Brachyury (T) in Complex with Dna To Be Published.