Sodium in PDB 6ejp: Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound

The structure of Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound, PDB code: 6ejp was solved by T.Karlberg, A.G.Thorsell, O.Ho, N.Sunduru, M.Elofsson, M.Wolf-Watz, H.Schuler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	23.39 / 2.48
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	53.740, 69.650, 242.670, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 25.2

The structure of Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Sodium atom in the Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound (pdb code 6ejp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound, PDB code: 6ejp:

Sodium binding site 1 out of 1 in the Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound within 5.0Å range: probe atom residue distance (Å) B Occ C:Na503 b:61.5 occ:1.00 O C:LYS386 3.6 42.8 1.0 N C:LYS386 3.6 41.3 1.0 CZ C:TYR387 4.1 50.2 1.0 CA C:PHE385 4.1 39.1 1.0 CB C:PHE385 4.1 38.2 1.0 CE1 C:TYR387 4.1 44.8 1.0 OH C:TYR387 4.1 47.9 1.0 CG2 C:VAL422 4.3 51.0 1.0 C C:LYS386 4.3 45.4 1.0 C C:PHE385 4.4 42.7 1.0 ND2 A:ASN253 4.4 55.0 1.0 CA C:LYS386 4.5 41.1 1.0 CE2 C:TYR387 4.6 43.4 1.0 CD1 C:TYR387 4.7 47.1 1.0 CG1 C:VAL422 4.9 52.0 1.0 CB C:LYS386 5.0 41.1 1.0

T.Karlberg, A.G.Thorsell, O.Ho, N.Sunduru, M.Elofsson, M.Wolf-Watz, H.Schuler. Yersinia Yscu C-Terminal Fragment in Complex with A Synthetic Compound To Be Published.