Sodium in PDB 6dzd: Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih

The structure of Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih, PDB code: 6dzd was solved by L.R.Almeida, M.P.Grejo, E.J.Mulinari, J.C.Santos, S.Camargo, A.Bernardes, J.R.C.Muniz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	54.94 / 2.66
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.567, 69.464, 179.589, 90.00, 90.00, 90.00
R / Rfree (%)	21.4 / 24.8

The structure of Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih also contains other interesting chemical elements:

Potassium	(K)	1 atom
Zinc	(Zn)	2 atoms
Chlorine	(Cl)	1 atom

The binding sites of Sodium atom in the Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih (pdb code 6dzd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih, PDB code: 6dzd:

Sodium binding site 1 out of 1 in the Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih within 5.0Å range: probe atom residue distance (Å) B Occ B:Na302 b:11.6 occ:1.00 O B:HOH438 2.3 18.5 1.0 OE2 B:GLU88 2.4 19.9 1.0 OE1 B:GLU88 2.5 17.9 1.0 CD B:GLU88 2.8 18.7 1.0 CG B:GLU88 4.3 18.1 1.0 O B:HOH448 4.7 16.9 1.0 CB B:ALA112 4.8 16.8 1.0 O B:HOH411 4.8 24.0 1.0 OG1 B:THR86 4.9 17.0 1.0

L.R.Almeida, M.P.Grejo, E.J.Mulinari, J.C.Santos, S.Camargo, A.Bernardes, J.R.C.Muniz. Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih To Be Published.