Sodium in PDB 6d9b: Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized)

The structure of Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized), PDB code: 6d9b was solved by K.Wangkanont, L.L.Kiessling, K.T.Forest, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.83 / 2.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	98.060, 98.060, 127.150, 90.00, 90.00, 90.00
R / Rfree (%)	15.3 / 19.2

The binding sites of Sodium atom in the Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized) (pdb code 6d9b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized), PDB code: 6d9b:

Sodium binding site 1 out of 1 in the Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Corynebacterium Diphtheriae Udp-Galactopyranose Mutase in Complex with Udp-Glucose (Open, Oxidized) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:55.2 occ:1.00 O A:SER126 2.3 51.1 1.0 O A:ILE129 2.4 56.5 1.0 O A:HOH588 2.5 48.6 1.0 O A:HOH671 2.6 56.4 1.0 O A:SER143 2.6 48.6 1.0 O A:HOH690 2.9 62.7 1.0 C A:SER126 3.4 52.6 1.0 C A:SER143 3.5 48.2 1.0 C A:ILE129 3.6 58.5 1.0 CA A:SER143 3.8 45.6 1.0 OG A:SER126 3.9 45.2 1.0 CB A:SER126 4.0 44.6 1.0 CA A:ASP130 4.1 61.6 1.0 CB A:SER143 4.2 52.8 1.0 N A:ASP130 4.3 56.0 1.0 N A:ALA127 4.3 46.5 1.0 CA A:SER126 4.3 50.6 1.0 CA A:ALA127 4.4 58.7 1.0 C A:ALA127 4.5 59.8 1.0 N A:ILE129 4.5 52.2 1.0 N A:SER131 4.5 54.2 1.0 O A:ALA127 4.5 62.9 1.0 CA A:ILE129 4.6 51.0 1.0 N A:LEU144 4.7 45.1 1.0 C A:ASP130 4.8 57.8 1.0 OG A:SER143 4.8 48.4 1.0

K.Wangkanont, K.T.Forest, L.L.Kiessling. Substrate Recognition By Fad in Udp-Galactopyranose Mutase To Be Published.