Sodium in PDB 6cpv: Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Sodium atom in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter (pdb code 6cpv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 12 binding sites of Sodium where determined in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter, PDB code: 6cpv:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na201 b:12.0 occ:0.14 O A:THR63 2.9 14.0 1.0 O A:VAL64 2.9 16.7 1.0 NA A:NA203 3.3 12.9 0.1 C A:VAL64 3.6 13.7 1.0 NA A:NA204 3.7 16.7 0.1 C A:THR63 3.9 13.6 1.0 CA A:VAL64 4.1 12.4 1.0 N A:VAL64 4.5 14.6 1.0 N A:GLY65 4.6 13.4 1.0 CA A:GLY65 5.0 14.4 1.0

Sodium binding site 2 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na202 b:34.2 occ:0.12 NA A:NA208 3.0 38.5 0.1 O A:GLY67 3.2 29.6 1.0 O A:HOH301 3.2 31.0 1.0 OD1 A:ASN68 4.3 36.4 1.0 C A:GLY67 4.4 26.9 1.0 CA A:ASN68 4.9 28.2 1.0

Sodium binding site 3 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:12.9 occ:0.10 O A:VAL64 3.1 16.7 1.0 NA A:NA201 3.3 12.0 0.1 CA A:GLY65 4.3 14.4 1.0 C A:VAL64 4.3 13.7 1.0 C A:GLY65 4.4 19.8 1.0 O A:GLY65 4.4 14.7 1.0 N A:GLY65 4.8 13.4 1.0

Sodium binding site 4 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na204 b:16.7 occ:0.07 O A:THR63 2.8 14.0 1.0 OG1 A:THR63 3.3 21.0 1.0 CB A:THR63 3.5 19.6 1.0 NA A:NA205 3.6 16.8 0.1 NA A:NA201 3.7 12.0 0.1 C A:THR63 3.8 13.6 1.0 CA A:THR63 4.3 16.4 1.0 CG2 A:THR63 4.7 20.7 1.0 N A:VAL64 4.8 14.6 1.0 O A:THR62 4.9 19.8 1.0

Sodium binding site 5 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na205 b:16.8 occ:0.09 NA A:NA204 3.6 16.7 0.1 OG1 A:THR63 3.9 21.0 1.0 CB A:THR63 4.8 19.6 1.0 CZ A:PHE92 4.9 36.2 1.0

Sodium binding site 6 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na206 b:48.6 occ:0.08 NA A:NA207 4.4 54.9 0.1

Sodium binding site 7 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na207 b:54.9 occ:0.11 NA A:NA206 4.4 48.6 0.1

Sodium binding site 8 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ A:Na208 b:38.5 occ:0.06 O A:HOH301 2.9 31.0 1.0 NA A:NA202 3.0 34.2 0.1 NA B:NA203 4.3 54.8 0.1

Sodium binding site 9 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:30.8 occ:0.17 O B:THR63 2.8 33.4 1.0 O B:VAL64 3.1 35.0 1.0 C B:VAL64 3.6 32.7 1.0 C B:THR63 3.7 30.6 1.0 NA B:NA202 3.9 35.2 0.1 CA B:VAL64 4.0 31.3 1.0 N B:VAL64 4.3 31.4 1.0 N B:GLY65 4.5 33.4 1.0 CA B:THR63 4.9 33.2 1.0 CA B:GLY65 4.9 35.0 1.0

Sodium binding site 10 out of 12 in the Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of Microed Structure of Nak Ion Channel Reveals A Process of Na+ Partition Into the Selectivity Filter within 5.0Å range: probe atom residue distance (Å) B Occ B:Na202 b:35.2 occ:0.14 O B:VAL64 3.4 35.0 1.0 NA B:NA201 3.9 30.8 0.2 CA B:GLY65 4.2 35.0 1.0 C B:VAL64 4.5 32.7 1.0 C B:GLY65 4.6 37.9 1.0 N B:GLY65 4.8 33.4 1.0 N B:ASP66 4.8 47.7 1.0 O B:ASP66 4.9 53.6 1.0

S.Liu, T.Gonen. Microed Structure of the Nak Ion Channel Reveals A Na+Partition Process Into the Selectivity Filter. Commun Biol V. 1 38 2018.
ISSN: ESSN 2399-3642
PubMed: 30167468
DOI: 10.1038/S42003-018-0040-8