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Sodium in PDB 6c86: Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine

Enzymatic activity of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine

All present enzymatic activity of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine:
6.1.1.6;

Protein crystallography data

The structure of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine, PDB code: 6c86 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.86 / 2.15
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 117.030, 142.870, 73.240, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 20.4

Other elements in 6c86:

The structure of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine (pdb code 6c86). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine, PDB code: 6c86:

Sodium binding site 1 out of 1 in 6c86

Go back to Sodium Binding Sites List in 6c86
Sodium binding site 1 out of 1 in the Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na603

b:47.6
occ:1.00
 OG1 A:THR361 2.3 29.6 1.0
O A:HOH1025 2.4 36.4 1.0
O A:HOH785 2.5 31.2 1.0
O A:THR361 2.8 33.9 1.0
C A:THR361 3.3 29.8 1.0
CB A:THR361 3.5 29.6 1.0
CA A:THR361 3.7 28.5 1.0
N A:THR361 3.7 24.7 1.0
O A:HOH1047 4.0 45.2 1.0
O A:HOH927 4.1 33.8 1.0
N A:PRO362 4.3 30.4 1.0
O A:HOH1008 4.5 36.4 1.0
CG2 A:THR361 4.6 23.9 1.0
CD A:PRO362 4.7 29.5 1.0
CG2 A:THR360 4.9 31.8 1.0
C A:THR360 4.9 28.7 1.0

Reference:

D.M.Dranow, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Lysyl-Trna Synthetase From Cryptosporidium Parvum Complexed with L-Lysylsulfamoyl Adenosine To Be Published.
Page generated: Mon Aug 18 03:59:32 2025

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