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Sodium in PDB 6awy: Structure of Peanut Allergen Ara H 8.01.

Protein crystallography data

The structure of Structure of Peanut Allergen Ara H 8.01., PDB code: 6awy was solved by L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.858, 103.209, 49.292, 90.00, 103.64, 90.00
R / Rfree (%) 20.6 / 25.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Peanut Allergen Ara H 8.01. (pdb code 6awy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Peanut Allergen Ara H 8.01., PDB code: 6awy:

Sodium binding site 1 out of 1 in 6awy

Go back to Sodium Binding Sites List in 6awy
Sodium binding site 1 out of 1 in the Structure of Peanut Allergen Ara H 8.01.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Peanut Allergen Ara H 8.01. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:43.7
occ:1.00
O B:PRO31 2.1 47.0 1.0
O B:HOH352 2.2 54.6 1.0
O B:VAL37 2.4 40.7 1.0
O B:ILE34 2.4 36.0 1.0
C B:PRO31 3.2 45.8 1.0
O B:ASP35 3.3 46.2 1.0
C B:ILE34 3.4 39.3 1.0
C B:VAL37 3.5 42.4 1.0
C B:ASP35 3.6 45.1 1.0
CA B:ASP35 3.6 46.7 1.0
CA B:PRO31 3.8 44.1 1.0
N B:ASP35 3.9 42.5 1.0
N B:VAL37 4.1 41.9 1.0
CA B:VAL37 4.3 41.4 1.0
N B:LYS32 4.4 46.6 1.0
N B:LYS38 4.4 44.3 1.0
CA B:LYS38 4.5 49.2 1.0
CB B:PRO31 4.5 45.9 1.0
N B:ASP36 4.6 45.8 1.0
CA B:ILE34 4.6 39.4 1.0
N B:ILE34 4.6 36.9 1.0
CD B:LYS38 4.6 56.0 1.0
O B:THR30 4.7 42.1 1.0
C B:LYS32 4.7 50.0 1.0
CB B:VAL37 4.7 39.0 1.0
CA B:LYS32 4.7 50.7 1.0
O B:LYS32 4.8 50.1 1.0
OD1 B:ASP35 4.8 71.5 1.0
NZ B:LYS38 4.8 59.6 1.0
C B:ASP36 4.9 46.0 1.0

Reference:

L.R.Offermann, J.Yarbrough, J.Mcbride, B.K.Hurlburt, S.J.Maleki, S.S.Pote, M.Chruszcz. Structure of Pr-10 Allergen Ara H 8.01. To Be Published.
Page generated: Tue Oct 8 01:56:37 2024

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