Sodium in PDB 6ape: Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori

All present enzymatic activity of Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori:
1.5.1.5; 3.5.4.9;

The structure of Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori, PDB code: 6ape was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.22 / 1.45
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	69.880, 109.040, 83.800, 90.00, 90.00, 90.00
R / Rfree (%)	16.7 / 18.2

The binding sites of Sodium atom in the Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori (pdb code 6ape). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori, PDB code: 6ape:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:44.2 occ:1.00 O A:HOH433 2.9 30.8 1.0 O A:HOH686 2.9 43.3 1.0 O A:HOH678 3.4 32.3 1.0 CG A:LYS87 3.6 22.5 1.0 CD A:LYS87 3.9 37.4 1.0 OG1 A:THR91 4.3 20.8 0.5 O A:HOH427 4.5 18.6 1.0 CG2 A:THR91 4.6 18.4 0.5 CE A:LYS87 4.6 49.2 1.0 OD1 A:ASP88 4.7 19.9 1.0 CB A:LYS87 5.0 16.1 1.0 OG1 A:THR91 5.0 20.1 0.5

Sodium binding site 2 out of 2 in the Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:31.4 occ:1.00 O A:HOH673 2.9 44.6 1.0 O A:HOH460 3.1 30.7 1.0 N A:ILE160 3.1 22.4 1.0 N A:LYS161 3.3 21.3 1.0 CA A:ILE160 3.8 21.9 1.0 CB A:ILE160 3.9 20.0 1.0 CB A:LYS161 3.9 22.3 1.0 CG A:GLU159 3.9 36.6 0.5 CA A:GLU159 4.0 25.3 0.5 CA A:GLU159 4.0 25.8 0.5 C A:ILE160 4.0 20.0 1.0 C A:GLU159 4.0 22.0 1.0 CA A:LYS161 4.2 20.1 1.0 CG1 A:ILE160 4.3 25.1 1.0 O A:HOH407 4.4 40.5 0.7 CB A:GLU159 4.5 32.7 0.5 O A:HOH715 4.5 29.7 0.6 CB A:GLU159 4.5 32.3 0.5 O A:ALA185 4.6 22.1 1.0 O A:ILE158 4.9 22.7 1.0 O A:HOH500 5.0 22.9 1.0

Ssgcid, S.L.Delker, D.M.Dranow, D.Lorimer, T.E.Edwards. Crystal Structure of Bifunctional Protein Fold From Helicobacter Pylori To Be Published.