Sodium in PDB 6a4w: Tetr From Mycobacterium Tuberculosis

The structure of Tetr From Mycobacterium Tuberculosis, PDB code: 6a4w was solved by S.M.Kang, D.H.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.54 / 2.59
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	118.154, 118.154, 90.906, 90.00, 90.00, 120.00
R / Rfree (%)	20 / 24.9

The binding sites of Sodium atom in the Tetr From Mycobacterium Tuberculosis (pdb code 6a4w). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Tetr From Mycobacterium Tuberculosis, PDB code: 6a4w:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Tetr From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tetr From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:61.8 occ:1.00 CB A:SER143 4.3 35.2 1.0 CB A:GLN94 4.4 36.9 1.0 CD2 A:LEU98 4.5 43.4 1.0 OG A:SER143 4.5 57.2 1.0 O A:ARG139 4.6 52.9 1.0 CG2 A:ILE77 4.6 43.0 1.0 O A:GLN94 4.7 54.8 1.0 CD1 A:PHE140 4.7 44.5 1.0 CE1 A:PHE140 4.7 51.9 1.0 CD A:GLN94 4.7 53.2 1.0 C A:GLN94 4.8 53.1 1.0 CA A:PHE140 4.9 48.2 1.0 NE2 A:GLN94 4.9 49.3 1.0 CG A:GLN94 4.9 51.0 1.0 OE1 A:GLN94 5.0 46.4 1.0 CB A:LEU98 5.0 43.4 1.0

Sodium binding site 2 out of 3 in the Tetr From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Tetr From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:66.4 occ:1.00 O A:HOH431 2.4 60.3 1.0 OE2 A:GLU118 3.3 60.4 1.0 CD2 A:TYR32 4.1 47.7 1.0 CD A:GLU118 4.2 76.6 1.0 OE1 A:GLU118 4.3 84.4 1.0 CD2 A:LEU115 4.3 43.3 1.0 CE2 A:TYR32 4.5 44.8 1.0 CG A:TYR32 4.5 47.9 1.0 CD2 A:LEU62 4.7 56.6 1.0 CB A:TYR32 4.9 59.8 1.0

Sodium binding site 3 out of 3 in the Tetr From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Tetr From Mycobacterium Tuberculosis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na303 b:61.1 occ:1.00 O B:HOH425 2.5 69.0 1.0 OE2 B:GLU118 3.0 80.8 1.0 OE1 B:GLU118 3.6 90.0 1.0 CD B:GLU118 3.7 79.8 1.0 CD2 B:TYR32 4.1 49.5 1.0 CE2 B:TYR32 4.3 52.0 1.0 CD2 B:LEU115 4.3 42.2 1.0 CD2 B:LEU114 4.6 59.4 1.0 CG B:TYR32 4.6 54.1 1.0 CD2 B:LEU62 4.7 64.7 1.0 CZ B:TYR32 5.0 62.8 1.0

S.M.Kang, D.H.Kim. Tetr From Mycobacterium Tuberculosis To Be Published.