Atomistry » Sodium » PDB 5zo9-5zwy » 5zou
Atomistry »
  Sodium »
    PDB 5zo9-5zwy »
      5zou »

Sodium in PDB 5zou: Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)

Enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)

All present enzymatic activity of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1):
1.4.3.21;

Protein crystallography data

The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1), PDB code: 5zou was solved by T.Murakawa, S.Baba, Y.Kawano, H.Hayashi, T.Yano, K.Tanizawa, T.Kumasaka, M.Yamamoto, T.Okajima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.35 / 1.68
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 193.440, 64.244, 158.805, 90.00, 117.12, 90.00
R / Rfree (%) 15.4 / 17.2

Other elements in 5zou:

The structure of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) (pdb code 5zou). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1), PDB code: 5zou:

Sodium binding site 1 out of 1 in 5zou

Go back to Sodium Binding Sites List in 5zou
Sodium binding site 1 out of 1 in the Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Copper Amine Oxidase From Arthrobacter Globiformis Anaerobically Reduced By Ethylamine at PH6 at 288 K (1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na702

b:12.6
occ:1.00
 OD1 B:ASP581 2.4 20.7 1.0
OD1 B:ASP440 2.5 20.8 1.0
O B:MET441 2.5 16.5 1.0
O B:ILE582 2.6 14.7 1.0
O B:HOH1058 2.8 17.2 1.0
N B:ILE582 3.3 14.4 1.0
N B:MET441 3.5 14.2 1.0
C B:ILE582 3.5 15.9 1.0
C B:MET441 3.5 14.5 1.0
CG B:ASP581 3.6 25.4 1.0
CG B:ASP440 3.7 17.5 1.0
C B:ASP581 3.8 16.3 1.0
NH2 B:ARG49 3.8 38.0 1.0
CD1 B:PHE446 3.9 23.1 1.0
C B:ASP440 3.9 13.5 1.0
CA B:ILE582 4.0 14.7 1.0
CA B:MET441 4.0 14.4 1.0
CA B:ASP581 4.1 14.8 1.0
CE1 B:PHE446 4.2 29.7 1.0
CA B:ASP440 4.4 11.0 1.0
CB B:ASP581 4.4 19.1 1.0
OD2 B:ASP440 4.5 17.8 1.0
OD2 B:ASP581 4.5 24.2 1.0
O B:ASP440 4.5 15.3 1.0
O B:ASP581 4.6 17.8 1.0
CB B:MET441 4.6 13.3 1.0
N B:VAL583 4.6 13.0 1.0
CB B:ASP440 4.6 13.0 1.0
N B:ALA442 4.7 14.2 1.0
CB B:TYR546 4.8 19.1 1.0
CG2 B:VAL583 4.8 16.2 1.0
CG1 B:ILE582 5.0 20.1 1.0

Reference:

T.Murakawa, S.Baba, Y.Kawano, H.Hayashi, T.Yano, T.Kumasaka, M.Yamamoto, K.Tanizawa, T.Okajima. In Crystallothermodynamic Analysis of Conformational Change of the Topaquinone Cofactor in Bacterial Copper Amine Oxidase Proc. Natl. Acad. Sci. V. 116 135 2019U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30563857
DOI: 10.1073/PNAS.1811837116
Page generated: Mon Aug 18 03:23:50 2025

Last articles

Mn in 9LJU
Mn in 9LJW
Mn in 9LJS
Mn in 9LJR
Mn in 9LJT
Mn in 9LJV
Mg in 9UA2
Mg in 9R96
Mg in 9VM1
Mg in 9P01
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy