Sodium »
PDB 5yt7-5zo8 »
5zco »
Sodium in PDB 5zco: Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days
Enzymatic activity of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days
All present enzymatic activity of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days:
1.9.3.1;
1.9.3.1;
Protein crystallography data
The structure of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days, PDB code: 5zco
was solved by
A.Shimada,
K.Hatano,
H.Tadehara,
T.Tsukihara,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 40.00 / 1.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 183.379, 206.655, 177.589, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 16.4 / 18.9 |
Other elements in 5zco:
The structure of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Zinc | (Zn) | 2 atoms |
| Iron | (Fe) | 6 atoms |
| Copper | (Cu) | 6 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days
(pdb code 5zco). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days, PDB code: 5zco:
Jump to Sodium binding site number: 1; 2;
In total 2 binding sites of Sodium where determined in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days, PDB code: 5zco:
Jump to Sodium binding site number: 1; 2;
Sodium binding site 1 out of 2 in 5zco
Go back to
Sodium Binding Sites List in 5zco
Sodium binding site 1 out
of 2 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days within 5.0Å range:
|
Sodium binding site 2 out of 2 in 5zco
Go back to
Sodium Binding Sites List in 5zco
Sodium binding site 2 out
of 2 in the Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Azide-Bound Cytochrome C Oxidase Structure Determined Using the Crystals Exposed to 2 Mm Azide Solution For 2 Days within 5.0Å range:
|
Reference:
A.Shimada,
K.Hatano,
H.Tadehara,
N.Yano,
K.Shinzawa-Itoh,
E.Yamashita,
K.Muramoto,
T.Tsukihara,
S.Yoshikawa.
X-Ray Structural Analyses of Azide-Bound Cytochromecoxidases Reveal That the H-Pathway Is Critically Important For the Proton-Pumping Activity. J. Biol. Chem. V. 293 14868 2018.
ISSN: ESSN 1083-351X
PubMed: 30077971
DOI: 10.1074/JBC.RA118.003123
Page generated: Tue Oct 8 01:30:54 2024
ISSN: ESSN 1083-351X
PubMed: 30077971
DOI: 10.1074/JBC.RA118.003123
Last articles
Fe in 7R2SFe in 7R0W
Fe in 7R2R
Fe in 7R2P
Fe in 7R2O
Fe in 7R1J
Fe in 7R1I
Fe in 7QWT
Fe in 7R1H
Fe in 7R0F
