Sodium in PDB 5xxs: Crystal Structure of Native Ribt From Bacillus Subtilis

The structure of Crystal Structure of Native Ribt From Bacillus Subtilis, PDB code: 5xxs was solved by R.Srivastava, S.Karthikeyan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.95 / 2.09
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	54.580, 57.444, 74.528, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 26.7

The binding sites of Sodium atom in the Crystal Structure of Native Ribt From Bacillus Subtilis (pdb code 5xxs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Native Ribt From Bacillus Subtilis, PDB code: 5xxs:

Sodium binding site 1 out of 1 in the Crystal Structure of Native Ribt From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Native Ribt From Bacillus Subtilis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na203 b:34.3 occ:1.00 O A:TYR36 2.2 28.8 1.0 O A:HOH343 2.3 49.4 1.0 O A:HOH316 2.4 34.1 1.0 O A:ASP39 2.5 38.0 1.0 O A:ARG42 2.5 37.0 1.0 C A:TYR36 3.4 26.1 1.0 C A:ASP39 3.5 37.9 1.0 C A:ARG42 3.7 33.8 1.0 O A:HOH333 3.7 31.6 1.0 C A:GLU37 4.0 29.7 1.0 O A:GLU37 4.0 31.9 1.0 CA A:THR40 4.2 37.8 1.0 N A:ASP39 4.3 37.9 1.0 N A:THR40 4.3 37.5 1.0 N A:GLU37 4.3 26.9 1.0 CA A:TYR36 4.3 26.8 1.0 CA A:GLU37 4.3 29.0 1.0 N A:THR38 4.4 30.6 1.0 CA A:ASP39 4.5 36.7 1.0 C A:THR40 4.5 34.8 1.0 N A:ARG42 4.5 37.5 1.0 O A:THR40 4.5 34.4 1.0 CA A:ARG42 4.6 36.0 1.0 N A:GLN43 4.6 31.5 1.0 CA A:GLN43 4.6 29.0 1.0 O A:ASP35 4.6 28.6 1.0 C A:THR38 4.8 35.9 1.0 CB A:ARG42 4.9 38.5 1.0

R.Srivastava, A.Kaur, C.Sharma, S.Karthikeyan. Structural Characterization of Ribt From Bacillus Subtilis Reveals It As A GCN5-Related N-Acetyltransferase. J. Struct. Biol. V. 202 70 2018.
ISSN: ESSN 1095-8657
PubMed: 29241954
DOI: 10.1016/J.JSB.2017.12.006