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Sodium in PDB 5xc0: Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

Enzymatic activity of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27

All present enzymatic activity of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27:
3.2.1.8;

Protein crystallography data

The structure of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5xc0 was solved by H.Bansia, P.Mahanta, S.Ramakumar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.96 / 2.32
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 52.229, 67.390, 177.760, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 24.8

Other elements in 5xc0:

The structure of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 (pdb code 5xc0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27, PDB code: 5xc0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 5xc0

Go back to Sodium Binding Sites List in 5xc0
Sodium binding site 1 out of 2 in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:10.9
occ:1.00
 O A:ASP302 2.2 19.4 1.0
O A:SER18 2.2 16.2 1.0
O A:LEU305 2.3 14.9 1.0
O A:HOH616 2.6 26.2 1.0
C A:LEU305 3.3 15.3 1.0
C A:ASP302 3.4 19.6 1.0
C A:SER18 3.4 16.8 1.0
CA A:SER306 4.0 14.8 1.0
CA A:ASP302 4.0 19.2 1.0
N A:SER306 4.1 14.7 1.0
CB A:ASP302 4.1 19.7 1.0
N A:LEU305 4.2 16.9 1.0
CA A:SER18 4.3 19.3 1.0
N A:PHE19 4.4 14.8 1.0
CA A:LEU305 4.4 15.6 1.0
N A:ALA303 4.4 20.4 1.0
CB A:PHE19 4.5 12.9 1.0
CA A:PHE19 4.5 13.7 1.0
C A:ALA303 4.6 22.1 1.0
CA A:ALA303 4.7 21.3 1.0
CD2 A:PHE19 4.7 12.5 1.0
O A:ALA303 4.7 24.4 1.0
CB A:SER306 4.9 14.8 1.0
C A:SER306 4.9 14.3 1.0
CG A:ASP302 4.9 20.5 1.0

Sodium binding site 2 out of 2 in 5xc0

Go back to Sodium Binding Sites List in 5xc0
Sodium binding site 2 out of 2 in the Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na402

b:15.5
occ:1.00
 O B:ASP302 2.3 26.8 1.0
O B:SER18 2.3 22.2 1.0
O B:HOH582 2.4 15.7 1.0
O B:LEU305 2.4 24.5 1.0
O B:HOH580 2.6 17.9 1.0
C B:LEU305 3.4 23.7 1.0
C B:ASP302 3.5 27.2 1.0
C B:SER18 3.5 22.4 1.0
CA B:SER306 3.9 20.9 1.0
N B:SER306 4.1 21.9 1.0
CA B:ASP302 4.2 28.0 1.0
N B:LEU305 4.2 27.1 1.0
CA B:SER18 4.3 22.8 1.0
CB B:ASP302 4.4 28.4 1.0
N B:PHE19 4.4 21.6 1.0
O B:HOH557 4.5 19.3 1.0
CA B:LEU305 4.5 25.0 1.0
N B:ALA303 4.5 27.6 1.0
CA B:PHE19 4.6 20.8 1.0
C B:ALA303 4.6 28.6 1.0
CB B:PHE19 4.6 21.1 1.0
O B:ALA303 4.6 27.7 1.0
CA B:ALA303 4.7 28.2 1.0
CB B:SER306 4.8 20.3 1.0
C B:SER306 4.9 19.6 1.0
CD2 B:PHE19 4.9 21.7 1.0

Reference:

H.Bansia, P.Mahanta, S.Ramakumar. Crystal Structure of An Aromatic Mutant (W6A) of An Alkali Thermostable GH10 Xylanase From Bacillus Sp. Ng-27 To Be Published.
Page generated: Tue Oct 8 01:12:30 2024

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