Sodium in PDB 5wrv: Complex Structure of Human SRP72/SRP68

The structure of Complex Structure of Human SRP72/SRP68, PDB code: 5wrv was solved by Y.Gao, Z.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.70
Space group	P 63 2 2
Cell size a, b, c (Å), α, β, γ (°)	120.598, 120.598, 80.001, 90.00, 90.00, 120.00
R / Rfree (%)	16.4 / 18.9

The binding sites of Sodium atom in the Complex Structure of Human SRP72/SRP68 (pdb code 5wrv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Complex Structure of Human SRP72/SRP68, PDB code: 5wrv:

Sodium binding site 1 out of 1 in the Complex Structure of Human SRP72/SRP68


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Complex Structure of Human SRP72/SRP68 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:36.5 occ:1.00 OH B:TYR132 2.6 26.3 1.0 OE2 B:GLU113 2.8 29.2 1.0 NE2 B:GLN117 2.8 22.2 1.0 CE1 B:TYR132 3.4 27.2 1.0 CZ B:TYR132 3.4 26.8 1.0 ND2 B:ASN150 3.5 25.3 1.0 CG B:GLN117 3.5 24.7 1.0 CG B:GLU113 3.5 26.4 1.0 CD B:GLU113 3.6 32.3 1.0 CB A:LEU593 3.6 25.4 1.0 CD B:GLN117 3.7 24.8 1.0 O B:GLU113 3.8 25.0 1.0 CD1 A:LEU593 3.9 30.2 1.0 CG A:LEU593 3.9 27.7 1.0 O A:PHE591 4.0 25.4 1.0 N A:LEU593 4.0 21.9 1.0 CA A:LEU593 4.3 23.4 1.0 C B:GLU113 4.6 24.7 1.0 N A:ALA594 4.6 22.5 1.0 CD1 B:TYR132 4.7 30.4 1.0 CG B:ASN150 4.7 24.6 1.0 OE1 B:GLU113 4.7 35.9 1.0 CE2 B:TYR132 4.7 28.9 1.0 CB B:GLU113 4.8 26.5 1.0 CA B:GLU113 4.8 24.9 1.0 C A:LEU593 4.8 24.5 1.0 OE1 B:GLN117 4.8 28.2 1.0 CB B:GLN117 5.0 24.0 1.0

Y.Gao, Q.Zhang, Y.Lang, Y.Liu, X.Dong, Z.Chen, W.Tian, J.Tang, W.Wu, Y.Tong, Z.Chen. Human Apo-SRP72 and SRP68/72 Complex Structures Reveal the Molecular Basis of Protein Translocation J Mol Cell Biol V. 9 220 2017.
ISSN: ESSN 1759-4685
PubMed: 28369529
DOI: 10.1093/JMCB/MJX010