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Sodium in PDB 5w2q: Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5

Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5:
2.3.1.41;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5, PDB code: 5w2q was solved by G.C.Capodagli, M.B.Neiditch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.20 / 1.80
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.289, 77.289, 145.126, 90.00, 90.00, 120.00
R / Rfree (%) 15.6 / 18.6

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5 (pdb code 5w2q). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5, PDB code: 5w2q:

Sodium binding site 1 out of 1 in 5w2q

Go back to Sodium Binding Sites List in 5w2q
Sodium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with 6U5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na504

b:28.8
occ:1.00
OE1 A:GLU354 2.3 30.9 1.0
OD1 A:ASN399 2.3 35.5 1.0
OD1 A:ASN309 2.4 27.5 1.0
O A:ALA310 2.5 29.4 1.0
O A:ASN309 2.6 28.6 1.0
O A:ASN400 2.9 26.0 1.0
C A:ALA310 3.1 30.5 1.0
C A:ASN309 3.2 30.2 1.0
CD A:GLU354 3.3 29.0 1.0
CG A:ASN309 3.4 27.4 1.0
CG A:ASN399 3.5 29.0 1.0
CB A:GLU354 3.6 25.5 1.0
N A:HIS311 3.7 28.5 1.0
N A:ALA310 3.8 26.4 1.0
N A:ASN400 3.8 24.0 1.0
CB A:ASN309 3.9 26.8 1.0
C A:ASN400 4.0 27.7 1.0
CG A:GLU354 4.0 25.7 1.0
CA A:ALA310 4.0 24.9 1.0
CA A:HIS311 4.0 26.4 1.0
CA A:ASN309 4.1 30.2 1.0
OE2 A:GLU354 4.2 31.4 1.0
ND2 A:ASN399 4.2 33.0 1.0
CA A:ASN400 4.4 23.1 1.0
O A:HOH689 4.4 34.1 1.0
ND2 A:ASN309 4.5 27.5 1.0
C A:ASN399 4.6 28.9 1.0
CB A:ASN399 4.6 23.9 1.0
CA A:ASN399 4.6 25.4 1.0
CB A:ASN400 4.8 25.5 1.0
CD A:PRO339 4.9 29.0 1.0
CG A:PRO339 4.9 30.6 1.0
C A:HIS311 4.9 30.7 1.0

Reference:

P.Kumar, G.C.Capodagli, D.Awasthi, R.Shrestha, K.Maharaja, P.Sukheja, S.G.Li, D.Inoyama, M.Zimmerman, H.P.Ho Liang, J.Sarathy, M.Mina, G.Rasic, R.Russo, A.L.Perryman, T.Richmann, A.Gupta, E.Singleton, S.Verma, S.Husain, P.Soteropoulos, Z.Wang, R.Morris, G.Porter, G.Agnihotri, P.Salgame, S.Ekins, K.Y.Rhee, N.Connell, V.Dartois, M.B.Neiditch, J.S.Freundlich, D.Alland. Synergistic Lethality of A Binary Inhibitor of Mycobacterium Tuberculosis Kasa. Mbio V. 9 2018.
ISSN: ESSN 2150-7511
PubMed: 30563908
DOI: 10.1128/MBIO.02101-17
Page generated: Mon Aug 18 02:55:51 2025

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