Atomistry » Sodium » PDB 5u6q-5uju » 5u7s
Atomistry »
  Sodium »
    PDB 5u6q-5uju »
      5u7s »

Sodium in PDB 5u7s: Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii

Enzymatic activity of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii

All present enzymatic activity of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii:
4.1.2.13;

Protein crystallography data

The structure of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii, PDB code: 5u7s was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.48 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 134.110, 83.120, 99.390, 90.00, 131.98, 90.00
R / Rfree (%) 19.9 / 26.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii (pdb code 5u7s). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii, PDB code: 5u7s:

Sodium binding site 1 out of 1 in 5u7s

Go back to Sodium Binding Sites List in 5u7s
Sodium binding site 1 out of 1 in the Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na402

b:65.9
occ:1.00
ND1 A:HIS232 2.3 41.0 1.0
NE2 A:HIS84 2.5 70.7 1.0
O3 A:CIT401 2.6 59.7 1.0
O4 A:CIT401 2.8 66.4 1.0
CE1 A:HIS198 3.0 48.9 1.0
CE1 A:HIS232 3.1 46.1 1.0
C5 A:CIT401 3.1 55.7 1.0
CD2 A:HIS84 3.2 72.0 1.0
CG A:HIS232 3.4 45.5 1.0
CE1 A:HIS84 3.5 68.9 1.0
OD2 A:ASP83 3.5 52.4 1.0
NE2 A:HIS198 3.8 49.1 1.0
ND2 A:ASN275 3.8 55.0 1.0
CB A:HIS232 3.9 37.4 1.0
ND1 A:HIS198 4.0 47.8 1.0
OD1 A:ASP83 4.1 50.7 1.0
CG A:ASP83 4.2 44.9 1.0
NE2 A:HIS232 4.3 44.5 1.0
CG A:HIS84 4.4 68.0 1.0
CD2 A:HIS232 4.5 50.3 1.0
ND1 A:HIS84 4.5 70.0 1.0
C4 A:CIT401 4.6 45.2 1.0
CD1 A:LEU146 4.7 39.0 1.0
CG A:ASN275 4.7 47.7 1.0
CA A:HIS232 4.7 37.6 1.0
CB A:ASN275 4.8 39.7 1.0

Reference:

T.E.Edwards, J.Abendroth, D.Lorimer, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Fructose-Bisphosphate Aldolase, Class II, Calvin Cycle Subtype From Acinetobacter Baumannii To Be Published.
Page generated: Tue Oct 8 00:27:04 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy