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Sodium in PDB 5tt0: Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis

Protein crystallography data

The structure of Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis, PDB code: 5tt0 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.43 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.690, 109.080, 73.530, 90.00, 99.65, 90.00
R / Rfree (%) 16.2 / 19.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis (pdb code 5tt0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis, PDB code: 5tt0:

Sodium binding site 1 out of 1 in 5tt0

Go back to Sodium Binding Sites List in 5tt0
Sodium binding site 1 out of 1 in the Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na314

b:8.4
occ:1.00
OG B:SER158 2.7 8.8 1.0
OG B:SER154 2.8 9.8 1.0
O B:SER154 3.1 7.5 1.0
C B:SER154 3.3 14.9 1.0
CB B:SER158 3.4 14.1 1.0
CA B:TYR155 3.5 13.7 1.0
N B:TYR155 3.5 9.1 1.0
O B:HOH514 3.8 12.9 1.0
CB B:SER154 3.8 15.2 1.0
CA B:SER154 4.2 11.9 1.0
CB B:TYR155 4.4 16.6 1.0
C B:TYR155 4.5 12.7 1.0
CA B:SER158 4.6 12.9 1.0
N B:SER158 4.7 9.1 1.0
O B:TYR155 4.7 7.9 1.0
CD1 B:TYR155 4.8 14.9 1.0
O B:HOH463 4.8 14.5 1.0

Reference:

D.M.Dranow, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Oxidoreductase (Short Chain Dehydrogenase/Reductase Family) From Burkholderia Thailandensis To Be Published.
Page generated: Mon Aug 18 02:21:31 2025

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