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Sodium in PDB 5tjy: Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh

Enzymatic activity of Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh

All present enzymatic activity of Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh:
1.17.1.8;

Protein crystallography data

The structure of Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh, PDB code: 5tjy was solved by N.Mank, K.Arnette, V.Klapper, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.40
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 66.421, 66.421, 249.363, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 19.5

Other elements in 5tjy:

The structure of Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh (pdb code 5tjy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh, PDB code: 5tjy:

Sodium binding site 1 out of 1 in 5tjy

Go back to Sodium Binding Sites List in 5tjy
Sodium binding site 1 out of 1 in the Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na307

b:48.4
occ:1.00
 O A:LEU26 2.1 45.2 1.0
O A:HOH491 2.3 63.3 1.0
O A:ALA23 2.4 48.5 1.0
O A:ALA21 2.5 57.5 1.0
O A:VAL20 2.5 42.4 1.0
O A:HOH482 3.1 39.1 1.0
C A:ALA21 3.2 45.8 1.0
C A:LEU26 3.3 44.5 1.0
C A:ALA23 3.5 49.0 1.0
C A:VAL20 3.6 45.6 1.0
CA A:ALA21 3.6 45.2 1.0
N A:ALA23 3.9 50.6 1.0
N A:ALA21 4.0 39.4 1.0
N A:ALA22 4.2 53.8 1.0
CA A:ALA23 4.2 49.5 1.0
N A:THR27 4.2 43.5 1.0
CA A:LEU26 4.2 49.0 1.0
N A:LEU26 4.3 46.0 1.0
CA A:THR27 4.3 42.4 1.0
C A:ALA22 4.3 50.8 1.0
CB A:LEU26 4.4 45.5 1.0
N A:ASP24 4.6 51.5 1.0
CB A:ALA23 4.6 44.0 1.0
CA A:ALA22 4.7 52.5 1.0
N A:LEU28 4.8 43.2 1.0
O A:ALA22 4.9 50.5 1.0
C A:ASP24 4.9 49.3 1.0
CA A:VAL20 4.9 41.7 1.0
CA A:ASP24 4.9 52.1 1.0
CG1 A:VAL20 5.0 42.6 1.0
O A:ASP24 5.0 48.0 1.0

Reference:

N.Mank, K.Arnette, V.Klapper, M.Chruszcz. Structure of 4-Hydroxy-Tetrahydrodipicolinate Reductase From Mycobacterium Tuberculosis with 2,6 Pyridine Dicarboxylic Acid and Nadh To Be Published.
Page generated: Tue Oct 8 00:10:33 2024

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