Sodium in PDB 5tib: Gasdermin-B C-Terminal Domain Containing the Polymorphism Residues ARG299:SER306 Fused to Maltose Binding Protein

The structure of Gasdermin-B C-Terminal Domain Containing the Polymorphism Residues ARG299:SER306 Fused to Maltose Binding Protein, PDB code: 5tib was solved by K.Chao, O.Herzberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	96.19 / 2.60
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	104.060, 104.060, 252.210, 90.00, 90.00, 90.00
R / Rfree (%)	18.4 / 23.3

The binding sites of Sodium atom in the Gasdermin-B C-Terminal Domain Containing the Polymorphism Residues ARG299:SER306 Fused to Maltose Binding Protein (pdb code 5tib). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Gasdermin-B C-Terminal Domain Containing the Polymorphism Residues ARG299:SER306 Fused to Maltose Binding Protein, PDB code: 5tib:

Sodium binding site 1 out of 1 in the Gasdermin-B C-Terminal Domain Containing the Polymorphism Residues ARG299:SER306 Fused to Maltose Binding Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Gasdermin-B C-Terminal Domain Containing the Polymorphism Residues ARG299:SER306 Fused to Maltose Binding Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1503 b:37.5 occ:1.00 O A:HOH1660 2.1 32.6 1.0 O A:HOH1699 2.2 16.1 1.0 O A:HOH1760 2.3 42.7 1.0 O A:GLY327 2.6 27.0 1.0 O A:GLN325 2.7 30.1 1.0 OE1 A:GLU328 3.5 72.1 1.0 C A:GLN325 3.8 27.5 1.0 C A:GLY327 3.8 26.2 1.0 O A:HOH1772 4.1 25.7 1.0 CD A:GLU328 4.3 56.7 1.0 C A:LYS326 4.4 27.2 1.0 CA A:GLN325 4.5 25.7 1.0 O A:ALA324 4.5 21.5 1.0 O A:LYS326 4.5 26.5 1.0 CA A:GLU328 4.6 29.2 1.0 O A:HOH1818 4.6 37.2 1.0 N A:GLY327 4.6 25.1 1.0 N A:GLU328 4.6 30.9 1.0 N A:LYS326 4.8 25.1 1.0 CA A:GLY327 4.8 24.0 1.0 CA A:LYS326 4.8 26.1 1.0 OE2 A:GLU328 4.9 67.3 1.0

L.K.Chao, L.Kulakova, O.Herzberg. Human Gasdermin-B and Disease: Sulfatide Binding, Caspase Cleavage, and Structural Impact of Asthma- and Ibs-Associated Polymorphism Proc.Natl.Acad.Sci.Usa 2017.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1616783114