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Sodium in PDB 5qte: T. Brucei Fpps in Complex with Cid 4563894

Protein crystallography data

The structure of T. Brucei Fpps in Complex with Cid 4563894, PDB code: 5qte was solved by L.Muenzker, J.K.Petrick, C.Schleberger, I.Cornaciu, J.A.Marquez, W.Jahnke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.87 / 2.07
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 60.583, 60.583, 341.208, 90.00, 90.00, 120.00
R / Rfree (%) 25.3 / 28.3

Other elements in 5qte:

The structure of T. Brucei Fpps in Complex with Cid 4563894 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the T. Brucei Fpps in Complex with Cid 4563894 (pdb code 5qte). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the T. Brucei Fpps in Complex with Cid 4563894, PDB code: 5qte:

Sodium binding site 1 out of 1 in 5qte

Go back to Sodium Binding Sites List in 5qte
Sodium binding site 1 out of 1 in the T. Brucei Fpps in Complex with Cid 4563894


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of T. Brucei Fpps in Complex with Cid 4563894 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:47.6
occ:1.00
OE1 A:GLU93 2.7 30.9 1.0
N A:ARG50 3.0 34.1 1.0
NH1 A:ARG50 3.0 30.1 1.0
CG A:ARG50 3.2 27.9 1.0
CB A:ARG50 3.3 29.6 1.0
N A:ASN49 3.4 40.0 1.0
OE2 A:GLU93 3.4 28.4 1.0
CD A:GLU93 3.5 28.9 1.0
O A:HOH571 3.5 35.3 1.0
CD A:ARG50 3.6 23.9 1.0
CA A:ARG50 3.7 32.8 1.0
C A:TYR48 3.8 39.3 1.0
CA A:TYR48 3.9 39.1 1.0
C A:ASN49 4.0 38.3 1.0
CZ A:ARG50 4.0 27.2 1.0
N A:TYR48 4.1 42.1 1.0
CA A:ASN49 4.1 41.5 1.0
NE A:ARG50 4.3 23.9 1.0
N A:GLY51 4.4 31.6 1.0
CB A:ASN49 4.5 44.8 1.0
O A:HOH592 4.5 40.8 1.0
O A:TYR48 4.6 38.6 1.0
C A:ARG50 4.6 33.4 1.0
CG A:GLU93 4.9 25.8 1.0

Reference:

L.Muenzker, L.Muenzker, J.K.Petrick, C.Schleberger, I.Cornaciu, J.A.Marquez, W.Jahnke. N/A N/A.
Page generated: Mon Aug 18 02:02:10 2025

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