Sodium in PDB 5odl: Single-Stranded Dna-Binding Protein From Bacteriophage ENC34 in Complex with Ssdna

The structure of Single-Stranded Dna-Binding Protein From Bacteriophage ENC34 in Complex with Ssdna, PDB code: 5odl was solved by E.Cernooka, J.Rumnieks, A.Kazaks, K.Tars, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.66 / 1.56
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	43.489, 43.489, 179.106, 90.00, 90.00, 120.00
R / Rfree (%)	14.1 / 19.1

The binding sites of Sodium atom in the Single-Stranded Dna-Binding Protein From Bacteriophage ENC34 in Complex with Ssdna (pdb code 5odl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Single-Stranded Dna-Binding Protein From Bacteriophage ENC34 in Complex with Ssdna, PDB code: 5odl:

Sodium binding site 1 out of 1 in the Single-Stranded Dna-Binding Protein From Bacteriophage ENC34 in Complex with Ssdna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Single-Stranded Dna-Binding Protein From Bacteriophage ENC34 in Complex with Ssdna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na205 b:53.2 occ:1.00 OE1 A:GLU128 2.3 34.0 1.0 NH1 A:ARG116 2.9 33.2 0.5 NH2 A:ARG116 3.0 12.2 0.5 CD A:GLU128 3.3 29.8 1.0 CZ A:ARG116 3.5 25.2 0.5 OE2 A:GLU128 3.7 31.2 1.0 NE A:ARG116 4.0 29.7 0.5 CZ A:ARG116 4.1 13.9 0.5 NH2 A:ARG116 4.3 32.7 0.5 NE A:ARG116 4.4 16.9 0.5 O A:HOH342 4.5 39.6 1.0 O A:HOH385 4.5 46.4 1.0 O A:HOH325 4.5 38.2 1.0 CG A:GLU128 4.7 29.8 1.0 O A:HOH314 4.9 25.5 1.0 O A:LEU127 5.0 26.2 1.0 CB A:GLU128 5.0 25.4 1.0

E.Cernooka, J.Rumnieks, K.Tars, A.Kazaks. Structural Basis For Dna Recognition of A Single-Stranded Dna-Binding Protein From Enterobacter Phage ENC34. Sci Rep V. 7 15529 2017.
ISSN: ESSN 2045-2322
PubMed: 29138440
DOI: 10.1038/S41598-017-15774-Y