Atomistry » Sodium » PDB 5mss-5nbj » 5n9f
Atomistry »
  Sodium »
    PDB 5mss-5nbj »
      5n9f »

Sodium in PDB 5n9f: Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A

Enzymatic activity of Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A

All present enzymatic activity of Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A:
3.6.1.3;

Protein crystallography data

The structure of Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A, PDB code: 5n9f was solved by W.-F.Chen, S.Rety, H.-L.Hai-Lei Guo, W.-Q.Wu, N.-N.Liu, Q.-W.Liu, Y.-X.Dai, X.-G.Xi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.10 / 2.97
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 306.683, 51.311, 164.860, 90.00, 115.55, 90.00
R / Rfree (%) 21.4 / 27

Other elements in 5n9f:

The structure of Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A (pdb code 5n9f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A, PDB code: 5n9f:

Sodium binding site 1 out of 1 in 5n9f

Go back to Sodium Binding Sites List in 5n9f
Sodium binding site 1 out of 1 in the Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Drosophila DHX36 Helicase in Complex with Ssdna CPG_A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na1001

b:53.0
occ:1.00
OD2 B:ASP266 2.9 58.6 1.0
CB B:ASP266 3.2 57.0 1.0
CG B:ASP266 3.4 59.2 1.0
CD2 B:LEU272 4.1 53.0 1.0
CA B:MET269 4.1 54.8 1.0
O B:GLN262 4.2 47.6 1.0
O B:ASP266 4.3 59.6 1.0
CB B:GLN262 4.3 53.5 1.0
CA B:ASP266 4.6 58.1 1.0
OD1 B:ASP266 4.6 59.5 1.0
C B:GLN262 4.6 51.3 1.0
OE1 B:GLN262 4.6 71.2 1.0
CD1 B:LEU259 4.6 40.6 1.0
CB B:MET269 4.7 59.9 1.0
CG B:MET269 4.9 68.3 1.0
N B:MET269 4.9 54.4 1.0
C B:MET269 4.9 55.3 1.0
C B:ASP266 4.9 56.7 1.0
CB B:ASN271 4.9 40.5 1.0
N B:ASN271 5.0 52.5 1.0

Reference:

W.-F.Chen, S.Rety, H.-L.Hai-Lei Guo, W.-Q.Wu, N.-N.Liu, Q.-W.Liu, Y.-X.Dai, X.-G.Xi. Structural and Mechanistic Insights Into DHX36-Mediated Innate Immunity and G-Quadruplex Unfolding To Be Published.
Page generated: Mon Oct 7 22:52:26 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy