Atomistry » Sodium » PDB 5m1y-5mfs » 5m60
Atomistry »
  Sodium »
    PDB 5m1y-5mfs »
      5m60 »

Sodium in PDB 5m60: Chaetomium Thermophilum Beta-1-3-Glucanase

Protein crystallography data

The structure of Chaetomium Thermophilum Beta-1-3-Glucanase, PDB code: 5m60 was solved by A.C.Papageorgiou, J.Chen, D.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.29 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.661, 83.535, 65.171, 90.00, 93.10, 90.00
R / Rfree (%) 15.7 / 18.2

Sodium Binding Sites:

The binding sites of Sodium atom in the Chaetomium Thermophilum Beta-1-3-Glucanase (pdb code 5m60). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Chaetomium Thermophilum Beta-1-3-Glucanase, PDB code: 5m60:

Sodium binding site 1 out of 1 in 5m60

Go back to Sodium Binding Sites List in 5m60
Sodium binding site 1 out of 1 in the Chaetomium Thermophilum Beta-1-3-Glucanase


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Chaetomium Thermophilum Beta-1-3-Glucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na906

b:32.2
occ:0.80
O A:HOH1638 2.2 39.3 1.0
O A:HOH1602 2.5 31.2 1.0
O A:HOH1247 2.6 24.6 1.0
OH A:TYR657 2.8 14.5 1.0
O5 A:BGC901 3.1 29.2 1.0
O1 A:BGC901 3.5 24.7 1.0
CZ A:TYR657 3.6 17.7 1.0
O A:HOH1438 3.7 42.2 1.0
CE2 A:TYR657 3.9 14.9 1.0
C1 A:BGC901 4.0 24.0 1.0
C6 A:BGC901 4.1 23.1 1.0
O A:HOH1474 4.2 34.5 1.0
O6 A:BGC901 4.2 22.7 1.0
C5 A:BGC901 4.2 19.9 1.0
CE1 A:PHE717 4.5 15.7 1.0
CE1 A:TYR657 4.6 15.3 1.0
O A:HOH1233 4.6 18.6 1.0
CZ A:PHE717 4.6 18.7 1.0
OE2 A:GLU654 4.7 15.4 1.0
OE1 A:GLU654 4.8 12.2 1.0
O A:HOH1286 4.8 41.9 1.0
C2 A:BGC901 4.9 13.9 1.0
CD2 A:PHE716 4.9 18.7 1.0
C4 A:BGC901 4.9 15.6 1.0

Reference:

A.C.Papageorgiou, J.Chen, D.Li. Crystal Structure and Biological Implications of A Glycoside Hydrolase Family 55 Beta-1,3-Glucanase From Chaetomium Thermophilum. Biochim. Biophys. Acta V.1865 1030 2017.
ISSN: ISSN 0006-3002
PubMed: 28479293
DOI: 10.1016/J.BBAPAP.2017.05.002
Page generated: Mon Oct 7 22:29:17 2024

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy