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Sodium in PDB 5m2t: X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution
Enzymatic activity of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution
All present enzymatic activity of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution:
2.4.2.3;
2.4.2.3;
Protein crystallography data
The structure of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution, PDB code: 5m2t
was solved by
I.I.Prokofev,
A.A.Lashkov,
A.G.Gabdulkhakov,
C.Betzel,
A.M.Mikhailov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 44.46 / 1.03 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 64.323, 72.039, 89.193, 110.56, 107.53, 85.83 |
| R / Rfree (%) | 11.8 / 13.7 |
Other elements in 5m2t:
The structure of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution also contains other interesting chemical elements:
| Magnesium | (Mg) | 1 atom |
| Chlorine | (Cl) | 6 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution
(pdb code 5m2t). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution, PDB code: 5m2t:
Jump to Sodium binding site number: 1; 2; 3;
In total 3 binding sites of Sodium where determined in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution, PDB code: 5m2t:
Jump to Sodium binding site number: 1; 2; 3;
Sodium binding site 1 out of 3 in 5m2t
Go back to
Sodium Binding Sites List in 5m2t
Sodium binding site 1 out
of 3 in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution within 5.0Å range:
|
Sodium binding site 2 out of 3 in 5m2t
Go back to
Sodium Binding Sites List in 5m2t
Sodium binding site 2 out
of 3 in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 2 of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution within 5.0Å range:
|
Sodium binding site 3 out of 3 in 5m2t
Go back to
Sodium Binding Sites List in 5m2t
Sodium binding site 3 out
of 3 in the X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 3 of X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution within 5.0Å range:
|
Reference:
I.I.Prokofev,
A.A.Lashkov,
A.G.Gabdulkhakov,
M.V.Dontsova,
C.Betzel,
A.M.Mikhailov.
X-Ray Structure of Uridine Phosphorylase From Vibrio Cholerae in Complex with Uridine at 1.03 A Resolution To Be Published.
Page generated: Mon Aug 18 00:57:38 2025
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