Sodium in PDB 5j2z: Prv UL37 N-Terminal Half (R2 Mutant)

The structure of Prv UL37 N-Terminal Half (R2 Mutant), PDB code: 5j2z was solved by E.E.Heldwein, J.D.Pitts, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.72 / 2.50
Space group	P 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	51.281, 68.696, 156.226, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 23.7

The structure of Prv UL37 N-Terminal Half (R2 Mutant) also contains other interesting chemical elements:

Calcium	(Ca)	10 atoms
Chlorine	(Cl)	3 atoms

The binding sites of Sodium atom in the Prv UL37 N-Terminal Half (R2 Mutant) (pdb code 5j2z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Prv UL37 N-Terminal Half (R2 Mutant), PDB code: 5j2z:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Prv UL37 N-Terminal Half (R2 Mutant)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Prv UL37 N-Terminal Half (R2 Mutant) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na511 b:57.0 occ:1.00 OD2 A:ASP399 2.4 58.1 1.0 O A:HOH630 2.4 54.5 1.0 O A:HOH605 2.6 36.5 1.0 CG A:ASP399 3.2 55.7 1.0 OD1 A:ASP399 3.2 62.2 1.0 CB A:ASP399 4.6 41.1 1.0

Sodium binding site 2 out of 2 in the Prv UL37 N-Terminal Half (R2 Mutant)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Prv UL37 N-Terminal Half (R2 Mutant) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na512 b:59.6 occ:1.00 OE1 A:GLN161 2.6 32.8 1.0 CD A:GLN161 3.4 37.6 1.0 O A:HOH661 3.5 42.8 1.0 NE2 A:GLN161 3.5 29.3 1.0 O A:HOH639 4.7 23.8 1.0 CG A:GLN161 4.9 34.6 1.0

A.L.Richards, P.J.Sollars, J.D.Pitts, A.M.Stults, E.E.Heldwein, G.E.Pickard, G.A.Smith. The PUL37 Tegument Protein Guides Alpha-Herpesvirus Retrograde Axonal Transport to Promote Neuroinvasion. Plos Pathog. V. 13 06741 2017.
ISSN: ESSN 1553-7374
PubMed: 29216315
DOI: 10.1371/JOURNAL.PPAT.1006741