Sodium in PDB 5hxa: Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans

All present enzymatic activity of Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans:
2.4.1.15;

The structure of Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans, PDB code: 5hxa was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.28 / 2.00
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	171.180, 171.180, 95.150, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 18.6

The binding sites of Sodium atom in the Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans (pdb code 5hxa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans, PDB code: 5hxa:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Na512 b:46.4 occ:1.00 O A:HOH975 2.2 36.1 1.0 O A:HOH663 2.2 36.8 1.0 O A:HOH837 2.3 35.6 1.0 O A:HOH884 2.4 31.8 1.0 O A:HOH898 4.2 20.2 1.0 CB A:ALA197 4.2 18.6 1.0 O A:HOH851 4.3 26.2 1.0 O A:HOH714 4.4 36.0 1.0 O A:GLN396 4.5 28.9 1.0 O1 A:EDO503 4.6 59.8 1.0 O A:HOH868 4.6 51.3 1.0 O A:HOH640 4.7 22.2 1.0 OG1 A:THR195 4.7 18.9 1.0

Sodium binding site 2 out of 2 in the Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Na513 b:72.3 occ:1.00 O A:HOH916 2.4 41.2 1.0 O A:HOH931 2.5 52.9 1.0 O A:HOH732 2.7 47.5 1.0 O A:HOH676 2.8 35.4 1.0 O A:HOH826 3.2 51.6 1.0 OD2 A:ASP388 3.6 39.5 1.0 CG A:ASP388 4.4 37.7 1.0 CB A:ASP388 4.6 31.4 1.0 O A:HOH835 4.9 56.5 1.0 O A:ASP388 4.9 23.7 1.0 O A:HOH972 5.0 56.0 1.0

S.J.Mayclin, D.M.Dranow, D.D.Lorimer, T.E.Edwards. Crystal Structure of An Udp-Forming Alpha, Alpha-Terhalose-Phosphate Synthase From Burkholderia Xenovorans To Be Published.