Sodium in PDB 5hdk: Crystal Structure of Heat Shock Factor 2-Dbd
Protein crystallography data
The structure of Crystal Structure of Heat Shock Factor 2-Dbd, PDB code: 5hdk
was solved by
H.Feng,
W.Liu,
D.C.Wang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
38.32 /
1.32
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.660,
67.260,
93.250,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.3 /
17.4
|
Other elements in 5hdk:
The structure of Crystal Structure of Heat Shock Factor 2-Dbd also contains other interesting chemical elements:
Sodium Binding Sites:
The binding sites of Sodium atom in the Crystal Structure of Heat Shock Factor 2-Dbd
(pdb code 5hdk). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total 9 binding sites of Sodium where determined in the
Crystal Structure of Heat Shock Factor 2-Dbd, PDB code: 5hdk:
Jump to Sodium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Sodium binding site 1 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 1 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na202
b:22.7
occ:1.00
|
O
|
A:TYR95
|
2.8
|
15.3
|
1.0
|
|
O
|
A:GLN100
|
2.8
|
18.4
|
1.0
|
|
N
|
A:LYS97
|
2.9
|
15.2
|
1.0
|
|
CA
|
A:PHE96
|
3.3
|
13.5
|
1.0
|
|
O
|
A:LYS97
|
3.5
|
17.6
|
1.0
|
|
CD2
|
A:LEU104
|
3.6
|
17.4
|
1.0
|
|
C
|
A:PHE96
|
3.6
|
13.0
|
1.0
|
|
C
|
A:GLN100
|
3.6
|
18.2
|
1.0
|
|
C
|
A:TYR95
|
3.6
|
14.3
|
1.0
|
|
NE1
|
A:TRP15
|
3.7
|
15.9
|
1.0
|
|
CD1
|
A:TRP15
|
3.8
|
15.9
|
1.0
|
|
CG
|
A:LEU104
|
3.8
|
16.8
|
1.0
|
|
N
|
A:PHE96
|
3.8
|
13.6
|
1.0
|
|
CB
|
A:LEU103
|
4.0
|
19.1
|
1.0
|
|
CA
|
A:LYS97
|
4.0
|
15.1
|
1.0
|
|
CA
|
A:ASP101
|
4.1
|
19.2
|
1.0
|
|
C
|
A:LYS97
|
4.2
|
14.9
|
1.0
|
|
N
|
A:ASP101
|
4.2
|
18.9
|
1.0
|
|
N
|
A:LEU104
|
4.2
|
16.8
|
1.0
|
|
CB
|
A:LYS97
|
4.5
|
17.1
|
1.0
|
|
CB
|
A:GLN100
|
4.5
|
23.2
|
1.0
|
|
C
|
A:LEU103
|
4.5
|
16.8
|
1.0
|
|
CA
|
A:GLN100
|
4.6
|
20.7
|
1.0
|
|
CB
|
A:PHE96
|
4.6
|
13.0
|
1.0
|
|
CA
|
A:LEU103
|
4.6
|
18.8
|
1.0
|
|
N
|
A:LEU103
|
4.6
|
18.8
|
1.0
|
|
CA
|
A:LEU104
|
4.7
|
16.6
|
1.0
|
|
CD1
|
A:LEU103
|
4.7
|
22.2
|
1.0
|
|
C
|
A:ASP101
|
4.8
|
18.2
|
1.0
|
|
CE2
|
A:TRP15
|
4.8
|
16.6
|
1.0
|
|
CG
|
A:LEU103
|
4.8
|
19.5
|
1.0
|
|
CD1
|
A:PHE96
|
4.8
|
14.5
|
1.0
|
|
O
|
A:PHE96
|
4.8
|
14.2
|
1.0
|
|
CG
|
A:PHE96
|
4.8
|
13.2
|
1.0
|
|
CB
|
A:LEU104
|
4.8
|
16.3
|
1.0
|
|
CG
|
A:TRP15
|
4.9
|
15.6
|
1.0
|
|
CA
|
A:TYR95
|
4.9
|
14.0
|
1.0
|
|
CD1
|
A:LEU104
|
4.9
|
17.0
|
1.0
|
|
N
|
A:GLN100
|
5.0
|
20.4
|
1.0
|
|
Sodium binding site 2 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 2 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 2 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na203
b:19.6
occ:1.00
|
O
|
A:PHE70
|
2.7
|
12.7
|
1.0
|
|
OD1
|
A:ASN66
|
2.8
|
17.0
|
1.0
|
|
O
|
B:HOH316
|
3.5
|
26.5
|
1.0
|
|
CG
|
A:ARG71
|
3.7
|
13.1
|
1.0
|
|
C
|
A:PHE70
|
3.8
|
10.6
|
1.0
|
|
CG
|
A:ASN66
|
3.9
|
16.6
|
1.0
|
|
CA
|
A:ARG71
|
4.0
|
11.4
|
1.0
|
|
N
|
A:ARG71
|
4.4
|
11.0
|
1.0
|
|
NZ
|
A:LYS110
|
4.4
|
25.9
|
1.0
|
|
CA
|
A:ASN66
|
4.4
|
13.4
|
1.0
|
|
CB
|
A:ASN66
|
4.4
|
14.3
|
1.0
|
|
CB
|
A:ARG71
|
4.5
|
12.1
|
1.0
|
|
CD
|
A:ARG71
|
4.7
|
12.7
|
1.0
|
|
O
|
A:HOH361
|
4.8
|
17.5
|
1.0
|
|
O
|
A:ASN66
|
4.9
|
14.7
|
1.0
|
|
C
|
A:GLY69
|
4.9
|
11.7
|
1.0
|
|
Sodium binding site 3 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 3 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 3 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Na204
b:18.8
occ:1.00
|
O
|
A:PHE96
|
2.7
|
14.2
|
1.0
|
|
O
|
A:GLN34
|
2.8
|
16.2
|
1.0
|
|
N
|
A:HIS93
|
2.9
|
12.6
|
1.0
|
|
CA
|
A:GLN92
|
3.2
|
12.8
|
1.0
|
|
O
|
A:HIS93
|
3.2
|
13.0
|
1.0
|
|
C
|
A:GLN92
|
3.5
|
12.5
|
1.0
|
|
C
|
A:GLN34
|
3.6
|
13.8
|
1.0
|
|
CG
|
A:GLN92
|
3.6
|
17.7
|
0.5
|
|
O
|
A:HOH334
|
3.7
|
20.3
|
1.0
|
|
CA
|
A:SER35
|
3.7
|
12.7
|
1.0
|
|
CB
|
A:GLN92
|
3.7
|
16.2
|
1.0
|
|
C
|
A:PHE96
|
3.8
|
13.0
|
1.0
|
|
CB
|
A:PHE96
|
3.9
|
13.0
|
1.0
|
|
CD2
|
A:PHE96
|
3.9
|
14.1
|
1.0
|
|
CA
|
A:HIS93
|
3.9
|
11.8
|
1.0
|
|
C
|
A:HIS93
|
3.9
|
13.4
|
1.0
|
|
N
|
A:SER35
|
4.0
|
13.9
|
1.0
|
|
O
|
A:PHE91
|
4.2
|
13.5
|
1.0
|
|
C
|
A:SER35
|
4.3
|
12.9
|
1.0
|
|
N
|
A:GLN92
|
4.3
|
12.0
|
1.0
|
|
CA
|
A:PHE96
|
4.4
|
13.5
|
1.0
|
|
CG
|
A:PHE96
|
4.4
|
13.2
|
1.0
|
|
CB
|
A:HIS93
|
4.4
|
12.4
|
1.0
|
|
N
|
A:PHE36
|
4.7
|
12.8
|
1.0
|
|
C
|
A:PHE91
|
4.7
|
12.9
|
1.0
|
|
N
|
A:PHE96
|
4.7
|
13.6
|
1.0
|
|
CZ3
|
A:TRP29
|
4.7
|
15.1
|
1.0
|
|
O
|
A:GLN92
|
4.8
|
12.9
|
1.0
|
|
CA
|
A:GLN34
|
4.8
|
18.9
|
1.0
|
|
CB
|
A:SER35
|
4.8
|
14.2
|
1.0
|
|
CD2
|
A:PHE36
|
4.9
|
15.9
|
1.0
|
|
CE2
|
A:PHE70
|
5.0
|
12.9
|
1.0
|
|
N
|
A:LYS97
|
5.0
|
15.2
|
1.0
|
|
CG
|
A:GLN92
|
5.0
|
16.4
|
0.5
|
|
CD
|
A:GLN92
|
5.0
|
19.0
|
0.5
|
|
Sodium binding site 4 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 4 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 4 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na203
b:36.7
occ:1.00
|
O
|
B:HOH409
|
2.6
|
51.4
|
1.0
|
|
O
|
B:HOH402
|
2.8
|
46.3
|
1.0
|
|
O
|
B:ARG63
|
2.9
|
16.9
|
1.0
|
|
ND2
|
B:ASN66
|
3.0
|
24.5
|
1.0
|
|
CG
|
B:MET67
|
3.4
|
39.5
|
1.0
|
|
CG
|
B:ARG63
|
3.5
|
29.5
|
1.0
|
|
CB
|
B:ASN66
|
3.6
|
16.7
|
1.0
|
|
CG
|
B:ASN66
|
3.8
|
19.7
|
1.0
|
|
C
|
B:ARG63
|
3.8
|
17.3
|
1.0
|
|
N
|
B:MET67
|
3.8
|
17.4
|
1.0
|
|
CA
|
B:ARG63
|
3.9
|
18.3
|
1.0
|
|
C
|
B:ASN66
|
4.2
|
16.9
|
1.0
|
|
CB
|
B:ARG63
|
4.3
|
23.7
|
1.0
|
|
CA
|
B:MET67
|
4.3
|
19.8
|
1.0
|
|
CB
|
B:MET67
|
4.4
|
28.0
|
1.0
|
|
CA
|
B:ASN66
|
4.4
|
16.4
|
1.0
|
|
O
|
B:HOH404
|
4.6
|
35.9
|
1.0
|
|
SD
|
B:MET67
|
4.7
|
50.7
|
1.0
|
|
CD
|
B:ARG63
|
4.8
|
37.3
|
1.0
|
|
N
|
B:ASN66
|
4.9
|
14.9
|
1.0
|
|
O
|
B:ASN66
|
4.9
|
17.6
|
1.0
|
|
NE
|
B:ARG63
|
4.9
|
44.5
|
1.0
|
|
OD1
|
B:ASN66
|
5.0
|
24.1
|
1.0
|
|
N
|
B:GLN64
|
5.0
|
16.8
|
1.0
|
|
Sodium binding site 5 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 5 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 5 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na204
b:18.6
occ:1.00
|
O
|
B:PHE96
|
2.7
|
13.7
|
1.0
|
|
O
|
B:GLN34
|
2.8
|
12.9
|
1.0
|
|
N
|
B:HIS93
|
2.9
|
12.5
|
1.0
|
|
CA
|
B:GLN92
|
3.2
|
12.2
|
1.0
|
|
O
|
B:HIS93
|
3.2
|
13.7
|
1.0
|
|
CB
|
B:GLN92
|
3.5
|
14.7
|
0.5
|
|
C
|
B:GLN92
|
3.6
|
12.7
|
1.0
|
|
CG
|
B:GLN92
|
3.6
|
13.6
|
0.5
|
|
NZ
|
B:LYS97
|
3.6
|
19.0
|
1.0
|
|
CA
|
B:SER35
|
3.7
|
11.8
|
1.0
|
|
C
|
B:GLN34
|
3.7
|
11.2
|
1.0
|
|
CB
|
B:GLN92
|
3.7
|
14.7
|
0.5
|
|
C
|
B:PHE96
|
3.8
|
13.4
|
1.0
|
|
CB
|
B:PHE96
|
3.9
|
13.2
|
1.0
|
|
C
|
B:HIS93
|
4.0
|
12.9
|
1.0
|
|
CA
|
B:HIS93
|
4.0
|
12.7
|
1.0
|
|
CD2
|
B:PHE96
|
4.0
|
13.8
|
1.0
|
|
N
|
B:SER35
|
4.0
|
11.9
|
1.0
|
|
O
|
B:PHE91
|
4.2
|
12.2
|
1.0
|
|
N
|
B:GLN92
|
4.4
|
11.5
|
1.0
|
|
CA
|
B:PHE96
|
4.4
|
13.6
|
1.0
|
|
CE
|
B:LYS97
|
4.4
|
24.8
|
1.0
|
|
CD
|
B:LYS97
|
4.5
|
23.5
|
1.0
|
|
CG
|
B:PHE96
|
4.5
|
13.2
|
1.0
|
|
C
|
B:SER35
|
4.5
|
11.4
|
1.0
|
|
CZ3
|
B:TRP29
|
4.6
|
13.9
|
1.0
|
|
CB
|
B:HIS93
|
4.6
|
13.9
|
1.0
|
|
CB
|
B:SER35
|
4.7
|
13.8
|
1.0
|
|
C
|
B:PHE91
|
4.7
|
11.6
|
1.0
|
|
N
|
B:PHE96
|
4.7
|
14.7
|
1.0
|
|
CG
|
B:GLN92
|
4.7
|
13.0
|
0.5
|
|
CD1
|
B:PHE36
|
4.7
|
17.7
|
1.0
|
|
N
|
B:PHE36
|
4.8
|
11.7
|
1.0
|
|
O
|
B:GLN92
|
4.8
|
14.1
|
1.0
|
|
CA
|
B:GLN34
|
4.9
|
13.5
|
1.0
|
|
N
|
B:LYS97
|
4.9
|
15.0
|
1.0
|
|
CD
|
B:GLN92
|
4.9
|
15.0
|
0.5
|
|
O
|
B:HOH333
|
5.0
|
42.4
|
1.0
|
|
Sodium binding site 6 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 6 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 6 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Na205
b:18.4
occ:1.00
|
OD1
|
B:ASN24
|
2.7
|
12.6
|
1.0
|
|
O
|
B:VAL18
|
2.8
|
12.4
|
1.0
|
|
N
|
B:TRP29
|
2.9
|
10.9
|
1.0
|
|
CD1
|
B:TRP29
|
3.2
|
12.7
|
1.0
|
|
CG
|
B:ASN24
|
3.6
|
12.0
|
1.0
|
|
OG1
|
B:THR28
|
3.6
|
12.4
|
1.0
|
|
CA
|
B:THR28
|
3.6
|
10.8
|
1.0
|
|
CB
|
B:TRP29
|
3.7
|
12.8
|
1.0
|
|
CG
|
B:TRP29
|
3.7
|
12.4
|
1.0
|
|
C
|
B:THR28
|
3.7
|
10.8
|
1.0
|
|
ND2
|
B:ASN24
|
3.8
|
14.5
|
1.0
|
|
CA
|
B:TRP29
|
3.9
|
11.7
|
1.0
|
|
C
|
B:VAL18
|
3.9
|
12.5
|
1.0
|
|
K
|
B:K201
|
4.0
|
11.6
|
1.0
|
|
CB
|
B:THR28
|
4.2
|
11.0
|
1.0
|
|
NE1
|
B:TRP29
|
4.2
|
13.8
|
1.0
|
|
O
|
B:GLU19
|
4.5
|
18.5
|
1.0
|
|
CG1
|
B:VAL18
|
4.5
|
14.6
|
1.0
|
|
CA
|
B:GLU19
|
4.6
|
15.1
|
1.0
|
|
O
|
B:TRP29
|
4.6
|
11.4
|
1.0
|
|
C
|
B:GLU19
|
4.6
|
16.6
|
1.0
|
|
O
|
B:ILE27
|
4.7
|
11.4
|
1.0
|
|
N
|
B:GLU19
|
4.7
|
12.8
|
1.0
|
|
C
|
B:TRP29
|
4.8
|
10.7
|
1.0
|
|
N
|
B:THR28
|
4.9
|
10.7
|
1.0
|
|
CD2
|
B:TRP29
|
4.9
|
12.0
|
1.0
|
|
CB
|
B:ASN24
|
4.9
|
11.6
|
1.0
|
|
CA
|
B:VAL18
|
4.9
|
12.7
|
1.0
|
|
O
|
B:THR28
|
4.9
|
11.3
|
1.0
|
|
O
|
B:GLU20
|
5.0
|
15.9
|
1.0
|
|
Sodium binding site 7 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 7 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 7 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Na202
b:17.5
occ:1.00
|
O
|
C:PHE96
|
2.7
|
13.3
|
1.0
|
|
O
|
C:GLN34
|
2.8
|
14.5
|
1.0
|
|
N
|
C:HIS93
|
2.9
|
11.0
|
1.0
|
|
CA
|
C:GLN92
|
3.2
|
12.2
|
1.0
|
|
O
|
C:HIS93
|
3.2
|
12.2
|
1.0
|
|
C
|
C:GLN92
|
3.5
|
11.4
|
1.0
|
|
C
|
C:GLN34
|
3.6
|
13.9
|
1.0
|
|
CB
|
C:GLN92
|
3.6
|
14.4
|
0.7
|
|
CA
|
C:SER35
|
3.7
|
13.1
|
1.0
|
|
O
|
C:HOH334
|
3.7
|
21.0
|
1.0
|
|
CB
|
C:GLN92
|
3.8
|
14.9
|
0.3
|
|
CD2
|
C:PHE96
|
3.8
|
12.8
|
1.0
|
|
CB
|
C:PHE96
|
3.8
|
12.2
|
1.0
|
|
C
|
C:PHE96
|
3.8
|
12.7
|
1.0
|
|
CG
|
C:GLN92
|
3.9
|
14.4
|
0.3
|
|
C
|
C:HIS93
|
3.9
|
12.0
|
1.0
|
|
CA
|
C:HIS93
|
4.0
|
11.2
|
1.0
|
|
N
|
C:SER35
|
4.0
|
13.2
|
1.0
|
|
O
|
C:PHE91
|
4.1
|
11.6
|
1.0
|
|
CG
|
C:PHE96
|
4.3
|
12.8
|
1.0
|
|
CA
|
C:PHE96
|
4.3
|
11.9
|
1.0
|
|
N
|
C:GLN92
|
4.4
|
10.6
|
1.0
|
|
C
|
C:SER35
|
4.4
|
12.2
|
1.0
|
|
CB
|
C:HIS93
|
4.5
|
11.3
|
1.0
|
|
CZ3
|
C:TRP29
|
4.6
|
13.2
|
1.0
|
|
N
|
C:PHE36
|
4.7
|
12.5
|
1.0
|
|
N
|
C:PHE96
|
4.7
|
12.6
|
1.0
|
|
C
|
C:PHE91
|
4.7
|
10.4
|
1.0
|
|
CA
|
C:GLN34
|
4.7
|
15.1
|
1.0
|
|
CB
|
C:SER35
|
4.7
|
14.8
|
1.0
|
|
CE2
|
C:PHE70
|
4.8
|
11.7
|
1.0
|
|
O
|
C:GLN92
|
4.8
|
12.3
|
1.0
|
|
CG
|
C:GLN92
|
4.9
|
14.9
|
0.7
|
|
CD2
|
C:PHE36
|
4.9
|
13.8
|
1.0
|
|
CE2
|
C:PHE96
|
4.9
|
15.1
|
1.0
|
|
CD
|
C:GLN92
|
5.0
|
21.2
|
0.3
|
|
N
|
C:LYS97
|
5.0
|
13.0
|
1.0
|
|
OG
|
C:SER35
|
5.0
|
15.7
|
0.3
|
|
Sodium binding site 8 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 8 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 8 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na206
b:18.4
occ:1.00
|
O
|
D:PHE96
|
2.8
|
12.1
|
1.0
|
|
O
|
D:GLN34
|
2.8
|
14.9
|
1.0
|
|
N
|
D:HIS93
|
2.9
|
11.8
|
1.0
|
|
CA
|
D:GLN92
|
3.2
|
12.1
|
1.0
|
|
O
|
D:HIS93
|
3.2
|
11.7
|
1.0
|
|
CG
|
D:GLN92
|
3.5
|
13.3
|
0.4
|
|
C
|
D:GLN92
|
3.6
|
11.5
|
1.0
|
|
NZ
|
D:LYS97
|
3.6
|
11.9
|
0.5
|
|
C
|
D:GLN34
|
3.6
|
12.3
|
1.0
|
|
CA
|
D:SER35
|
3.6
|
11.1
|
1.0
|
|
CB
|
D:GLN92
|
3.7
|
14.7
|
0.2
|
|
CB
|
D:GLN92
|
3.7
|
14.1
|
0.4
|
|
CB
|
D:GLN92
|
3.7
|
15.9
|
0.4
|
|
C
|
D:PHE96
|
3.9
|
11.6
|
1.0
|
|
CB
|
D:PHE96
|
3.9
|
11.6
|
1.0
|
|
CD2
|
D:PHE96
|
4.0
|
12.9
|
1.0
|
|
C
|
D:HIS93
|
4.0
|
11.5
|
1.0
|
|
N
|
D:SER35
|
4.0
|
11.0
|
1.0
|
|
CA
|
D:HIS93
|
4.0
|
11.6
|
1.0
|
|
O
|
D:PHE91
|
4.1
|
11.3
|
1.0
|
|
CG
|
D:GLN92
|
4.1
|
20.3
|
0.4
|
|
N
|
D:GLN92
|
4.3
|
11.8
|
1.0
|
|
CA
|
D:PHE96
|
4.4
|
11.8
|
1.0
|
|
CG
|
D:PHE96
|
4.4
|
12.5
|
1.0
|
|
C
|
D:SER35
|
4.5
|
10.3
|
1.0
|
|
CD
|
D:GLN92
|
4.6
|
15.3
|
0.4
|
|
CB
|
D:HIS93
|
4.6
|
12.3
|
1.0
|
|
CZ3
|
D:TRP29
|
4.6
|
12.5
|
1.0
|
|
CB
|
D:SER35
|
4.6
|
13.3
|
1.0
|
|
C
|
D:PHE91
|
4.7
|
10.3
|
1.0
|
|
CE
|
D:LYS97
|
4.7
|
17.6
|
0.5
|
|
N
|
D:PHE96
|
4.7
|
12.8
|
1.0
|
|
CD
|
D:LYS97
|
4.7
|
19.5
|
0.5
|
|
N
|
D:PHE36
|
4.8
|
10.7
|
1.0
|
|
O
|
D:GLN92
|
4.8
|
12.9
|
1.0
|
|
CA
|
D:GLN34
|
4.8
|
12.8
|
1.0
|
|
CD1
|
D:PHE36
|
4.8
|
16.2
|
1.0
|
|
CG
|
D:GLN92
|
4.9
|
16.2
|
0.2
|
|
NE2
|
D:GLN92
|
5.0
|
16.1
|
0.4
|
|
N
|
D:LYS97
|
5.0
|
13.7
|
1.0
|
|
Sodium binding site 9 out
of 9 in 5hdk
Go back to
Sodium Binding Sites List in 5hdk
Sodium binding site 9 out
of 9 in the Crystal Structure of Heat Shock Factor 2-Dbd
 Mono view
 Stereo pair view
|
|
A full contact list of Sodium with other atoms in the Na binding
site number 9 of Crystal Structure of Heat Shock Factor 2-Dbd within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Na207
b:18.1
occ:1.00
|
OD1
|
D:ASN24
|
2.7
|
12.8
|
1.0
|
|
O
|
D:VAL18
|
2.8
|
12.1
|
1.0
|
|
N
|
D:TRP29
|
2.9
|
9.1
|
1.0
|
|
CD1
|
D:TRP29
|
3.2
|
11.6
|
1.0
|
|
OG1
|
D:THR28
|
3.6
|
12.2
|
1.0
|
|
CG
|
D:ASN24
|
3.6
|
12.2
|
1.0
|
|
CA
|
D:THR28
|
3.6
|
10.5
|
1.0
|
|
CG
|
D:TRP29
|
3.6
|
10.4
|
1.0
|
|
CB
|
D:TRP29
|
3.6
|
11.0
|
1.0
|
|
C
|
D:THR28
|
3.7
|
9.5
|
1.0
|
|
ND2
|
D:ASN24
|
3.7
|
13.5
|
1.0
|
|
CA
|
D:TRP29
|
3.8
|
9.8
|
1.0
|
|
K
|
D:K202
|
4.0
|
11.7
|
1.0
|
|
C
|
D:VAL18
|
4.0
|
11.5
|
1.0
|
|
CB
|
D:THR28
|
4.2
|
11.3
|
1.0
|
|
NE1
|
D:TRP29
|
4.2
|
12.3
|
1.0
|
|
O
|
D:HOH342
|
4.3
|
48.6
|
1.0
|
|
CG1
|
D:VAL18
|
4.5
|
13.1
|
1.0
|
|
O
|
D:GLU19
|
4.5
|
16.7
|
1.0
|
|
O
|
D:ILE27
|
4.6
|
10.7
|
1.0
|
|
CA
|
D:GLU19
|
4.6
|
13.8
|
1.0
|
|
O
|
D:TRP29
|
4.6
|
10.6
|
1.0
|
|
C
|
D:GLU19
|
4.7
|
15.1
|
1.0
|
|
N
|
D:GLU19
|
4.8
|
12.1
|
1.0
|
|
C
|
D:TRP29
|
4.8
|
9.7
|
1.0
|
|
N
|
D:THR28
|
4.8
|
9.7
|
1.0
|
|
CD2
|
D:TRP29
|
4.8
|
11.3
|
1.0
|
|
NE2
|
D:GLN98
|
4.9
|
18.5
|
1.0
|
|
CB
|
D:ASN24
|
4.9
|
11.7
|
1.0
|
|
O
|
D:THR28
|
4.9
|
10.2
|
1.0
|
|
CA
|
D:VAL18
|
5.0
|
10.8
|
1.0
|
|
Reference:
H.Feng,
W.Liu,
D.C.Wang.
HSF1-Dbd Crystal Structure To Be Published.
Page generated: Mon Oct 7 21:23:07 2024
|
