Sodium in PDB 5fva: Toscana Virus Nucleocapsid Protein

The structure of Toscana Virus Nucleocapsid Protein, PDB code: 5fva was solved by A.Baklouti, M.Sevajol, A.Goulet, J.Lichiere, F.Ferron, B.Canard, R.N.Charrel, B.Coutard, N.Papageorgiou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.22 / 3.70
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	174.615, 174.615, 89.824, 90.00, 90.00, 120.00
R / Rfree (%)	22.8 / 27.1

The binding sites of Sodium atom in the Toscana Virus Nucleocapsid Protein (pdb code 5fva). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 5 binding sites of Sodium where determined in the Toscana Virus Nucleocapsid Protein, PDB code: 5fva:
Jump to Sodium binding site number: 1; 2; 3; 4; 5;

Sodium binding site 1 out of 5 in the Toscana Virus Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Toscana Virus Nucleocapsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1000 b:37.2 occ:1.00 CZ2 A:TRP119 3.8 91.1 1.0 CH2 A:TRP119 4.6 98.8 1.0 CE2 A:TRP119 4.8 0.6 1.0

Sodium binding site 2 out of 5 in the Toscana Virus Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Toscana Virus Nucleocapsid Protein within 5.0Å range:

Sodium binding site 3 out of 5 in the Toscana Virus Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Toscana Virus Nucleocapsid Protein within 5.0Å range:

Sodium binding site 4 out of 5 in the Toscana Virus Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of Toscana Virus Nucleocapsid Protein within 5.0Å range:

Sodium binding site 5 out of 5 in the Toscana Virus Nucleocapsid Protein


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of Toscana Virus Nucleocapsid Protein within 5.0Å range: probe atom residue distance (Å) B Occ F:Na1000 b:64.5 occ:1.00 CB F:GLN122 4.2 0.9 1.0 CZ3 F:TRP119 4.2 0.6 1.0 CE3 F:TRP119 4.3 0.1 1.0

A.Baklouti, A.Goulet, J.Lichiere, B.Canard, R.N.Charrel, F.Ferron, B.Coutard, N.Papageorgiou. Toscana Virus Nucleoprotein Oligomer Organization Observed in Solution. Acta Crystallogr D Struct V. 73 650 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28777080
DOI: 10.1107/S2059798317008774