Sodium in PDB 5fhy: Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1

The structure of Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1, PDB code: 5fhy was solved by S.Postel, D.Bonsor, K.Diederichs, E.J.Sundberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	62.37 / 2.20
Space group	P 6
Cell size a, b, c (Å), α, β, γ (°)	124.741, 124.741, 107.010, 90.00, 90.00, 120.00
R / Rfree (%)	24.9 / 28.7

The binding sites of Sodium atom in the Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1 (pdb code 5fhy). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 3 binding sites of Sodium where determined in the Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1, PDB code: 5fhy:
Jump to Sodium binding site number: 1; 2; 3;

Sodium binding site 1 out of 3 in the Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na501 b:65.4 occ:1.00 O A:SER218 2.8 70.2 1.0 O A:ALA222 2.8 57.8 1.0 O A:GLY220 2.9 65.5 1.0 C A:GLY220 3.1 64.9 1.0 O A:HOH628 3.2 65.3 1.0 N A:ALA222 3.3 75.1 1.0 CA A:GLY220 3.4 69.1 1.0 C A:ALA222 3.4 72.4 1.0 O A:ASP219 3.5 68.9 1.0 CB A:ALA222 3.5 68.9 1.0 CA A:ALA222 3.6 71.4 1.0 C A:ASP219 3.6 69.4 1.0 N A:GLY220 3.6 74.7 1.0 C A:SER218 3.8 62.6 1.0 N A:ALA221 3.9 68.3 1.0 C A:ALA221 4.0 72.7 1.0 CD1 A:LEU217 4.2 53.4 1.0 CB B:PRO215 4.2 73.2 1.0 N A:SER218 4.4 53.7 1.0 OG A:SER218 4.4 79.2 1.0 CA A:ALA221 4.5 70.2 1.0 CA A:ASP219 4.6 63.7 1.0 N A:ASP219 4.6 60.5 1.0 N A:ALA223 4.6 71.6 1.0 NH1 A:ARG175 4.6 57.9 1.0 CA A:SER218 4.7 60.6 1.0 O A:ALA221 4.8 71.2 1.0 O A:ALA223 4.8 59.5 1.0 NH2 A:ARG175 4.8 59.0 1.0 O B:THR213 4.9 74.8 1.0 CA B:PRO215 4.9 75.7 1.0

Sodium binding site 2 out of 3 in the Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na501 b:71.5 occ:1.00 O B:HOH602 2.6 69.7 1.0 NA B:NA502 2.8 52.9 1.0 O B:ALA223 3.0 80.7 1.0 N B:SER218 3.1 67.5 1.0 O B:SER218 3.6 69.3 1.0 CA B:LEU217 3.6 77.7 1.0 O B:ALA222 3.6 71.5 1.0 CD1 B:LEU217 3.7 69.1 1.0 OG B:SER218 3.7 77.7 1.0 C B:ALA223 3.7 77.0 1.0 CB A:PRO215 3.8 72.0 1.0 C B:LEU217 3.8 80.2 1.0 O B:LYS216 4.0 72.1 1.0 C B:ALA222 4.1 72.4 1.0 CA B:SER218 4.1 68.1 1.0 CA B:GLY224 4.1 83.5 1.0 C B:SER218 4.2 69.1 1.0 N B:GLY224 4.2 78.9 1.0 CB B:ALA222 4.2 72.9 1.0 CG A:PRO215 4.3 67.9 1.0 CG B:PRO215 4.3 69.7 1.0 CB B:SER218 4.4 68.4 1.0 CG B:LEU217 4.5 68.4 1.0 N B:LEU217 4.5 65.9 1.0 N B:ALA223 4.5 73.3 1.0 CB B:LEU217 4.5 67.3 1.0 C B:LYS216 4.6 72.2 1.0 CA B:ALA223 4.6 76.1 1.0 CA B:ALA222 4.7 73.2 1.0 O B:HOH609 4.8 59.0 1.0 O A:HOH613 4.9 64.0 1.0

Sodium binding site 3 out of 3 in the Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of Crystal Structure of Flid (HAP2) From Pseudomonas Aeruginosa PAO1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na502 b:52.9 occ:1.00 O B:SER218 2.6 69.3 1.0 O B:ALA222 2.6 71.5 1.0 NA B:NA501 2.8 71.5 1.0 O B:GLY220 3.0 72.3 1.0 C B:ALA222 3.3 72.4 1.0 C B:GLY220 3.4 79.8 1.0 N B:ALA222 3.4 76.2 1.0 CB B:ALA222 3.6 72.9 1.0 CA B:ALA222 3.6 73.2 1.0 C B:SER218 3.6 69.1 1.0 O B:ASP219 3.7 85.6 1.0 CA B:GLY220 3.7 80.5 1.0 C B:ASP219 3.7 71.5 1.0 N B:GLY220 3.8 78.9 1.0 CD1 B:LEU217 4.0 69.1 1.0 C B:ALA221 4.2 79.1 1.0 N B:ALA221 4.2 73.7 1.0 N B:SER218 4.2 67.5 1.0 CB A:PRO215 4.2 72.0 1.0 OG B:SER218 4.3 77.7 1.0 NH1 B:ARG175 4.4 68.3 1.0 N B:ASP219 4.5 70.1 1.0 N B:ALA223 4.5 73.3 1.0 CA B:SER218 4.5 68.1 1.0 CA B:ASP219 4.5 73.3 1.0 O B:ALA223 4.6 80.7 1.0 CA B:ALA221 4.7 77.3 1.0 O A:THR213 4.8 85.0 1.0 O B:HOH602 4.9 69.7 1.0 O B:ALA221 4.9 77.8 1.0 CA A:PRO215 4.9 68.6 1.0 C B:ALA223 4.9 77.0 1.0

S.Postel, D.Deredge, D.A.Bonsor, X.Yu, K.Diederichs, S.Helmsing, A.Vromen, A.Friedler, M.Hust, E.H.Egelman, D.Beckett, P.L.Wintrode, E.J.Sundberg. Bacterial Flagellar Capping Proteins Adopt Diverse Oligomeric States. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27664419
DOI: 10.7554/ELIFE.18857