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Sodium in PDB 5f31: Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - P 42 21 2 Space Group

Protein crystallography data

The structure of Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - P 42 21 2 Space Group, PDB code: 5f31 was solved by D.Albesa-Jove, Z.Svetlikova, A.Carreras-Gonzalez, M.Tersa, E.Sancho-Vaello, J.O.Cifuente, K.Mikusova, M.E.Guerin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.19 / 2.43
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.302, 80.302, 113.766, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 27.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - P 42 21 2 Space Group (pdb code 5f31). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - P 42 21 2 Space Group, PDB code: 5f31:

Sodium binding site 1 out of 1 in 5f31

Go back to Sodium Binding Sites List in 5f31
Sodium binding site 1 out of 1 in the Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - P 42 21 2 Space Group


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Membrane Associated Pata From Mycobacterium Smegmatis in Complex with Palmitate - P 42 21 2 Space Group within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:46.1
occ:0.25
OD2 A:ASP70 2.4 48.0 1.0
CG A:ASP70 3.1 29.3 1.0
OD1 A:ASP70 3.6 29.2 1.0
CB A:ASP70 4.2 33.7 1.0
O A:HOH536 4.2 32.5 0.5

Reference:

D.Albesa-Jove, Z.Svetlikova, M.Tersa, E.Sancho-Vaello, A.Carreras-Gonzalez, P.Bonnet, P.Arrasate, A.Eguskiza, S.K.Angala, J.O.Cifuente, J.Kordulakova, M.Jackson, K.Mikusova, M.E.Guerin. Structural Basis For Selective Recognition of Acyl Chains By the Membrane-Associated Acyltransferase Pata. Nat Commun V. 7 10906 2016.
ISSN: ESSN 2041-1723
PubMed: 26965057
DOI: 10.1038/NCOMMS10906
Page generated: Sun Aug 17 23:45:35 2025

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