Sodium in PDB 5eor: Structure of the Murine Antibody Fab 8E3 Bound to the Vaccinia Virus A27 Peptide 101-110

The structure of Structure of the Murine Antibody Fab 8E3 Bound to the Vaccinia Virus A27 Peptide 101-110, PDB code: 5eor was solved by M.H.Matho, D.M.Zajonc, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.62 / 2.27
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	118.250, 118.250, 198.740, 90.00, 90.00, 120.00
R / Rfree (%)	20.3 / 22.4

The binding sites of Sodium atom in the Structure of the Murine Antibody Fab 8E3 Bound to the Vaccinia Virus A27 Peptide 101-110 (pdb code 5eor). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of the Murine Antibody Fab 8E3 Bound to the Vaccinia Virus A27 Peptide 101-110, PDB code: 5eor:

Sodium binding site 1 out of 1 in the Structure of the Murine Antibody Fab 8E3 Bound to the Vaccinia Virus A27 Peptide 101-110


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of the Murine Antibody Fab 8E3 Bound to the Vaccinia Virus A27 Peptide 101-110 within 5.0Å range: probe atom residue distance (Å) B Occ H:Na301 b:36.4 occ:1.00 O H:TYR33 2.7 29.3 1.0 NZ H:LYS72 2.9 31.2 1.0 O H:ILE52 3.2 21.4 1.0 O H:TRP53 3.3 22.4 1.0 O H:LEU30 3.5 37.1 1.0 CD H:LYS72 3.6 28.9 1.0 C H:TRP53 3.6 23.6 1.0 CE H:LYS72 3.7 30.4 1.0 C H:TYR33 3.8 29.3 1.0 CA H:SER54 3.8 27.7 1.0 N H:SER54 3.8 25.0 1.0 CA H:GLY34 3.9 25.4 1.0 C H:ILE52 4.0 20.9 1.0 N H:VAL35 4.0 22.1 1.0 CG2 H:VAL35 4.1 21.0 1.0 CG2 H:ILE52 4.1 20.2 1.0 C H:GLY34 4.3 25.3 1.0 CB H:LEU30 4.3 34.0 1.0 N H:GLY34 4.3 27.0 1.0 CA H:TRP53 4.4 21.9 1.0 C H:LEU30 4.5 36.6 1.0 CD2 H:LEU30 4.5 33.1 1.0 N H:TRP53 4.5 21.0 1.0 CG1 H:ILE52 4.6 19.9 1.0 CA H:LEU30 4.6 36.3 1.0 C H:SER54 4.6 28.4 1.0 O H:SER54 4.7 31.0 1.0 CB H:ILE52 4.8 20.1 1.0 CG H:LEU30 4.8 34.2 1.0 CB H:VAL35 4.8 20.9 1.0 CB H:SER54 4.9 27.5 1.0 CD1 H:LEU30 5.0 33.6 1.0 CA H:ILE52 5.0 20.4 1.0 CG H:LYS72 5.0 28.8 1.0

T.Kaever, M.H.Matho, X.Meng, L.Crickard, A.Schlossman, Y.Xiang, S.Crotty, B.Peters, D.M.Zajonc. Linear Epitopes in Vaccinia Virus A27 Are Targets of Protective Antibodies Induced By Vaccination Against Smallpox. J.Virol. V. 90 4334 2016.
ISSN: ESSN 1098-5514
PubMed: 26889021
DOI: 10.1128/JVI.02878-15