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Sodium in PDB 5e4z: Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution

Enzymatic activity of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution

All present enzymatic activity of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution:
4.4.1.11;

Protein crystallography data

The structure of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution, PDB code: 5e4z was solved by S.V.Revtovich, A.D.Nikulin, N.V.Anufrieva, E.A.Morozova, T.V.Demidkina, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.27
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.290, 122.631, 127.296, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 23.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution (pdb code 5e4z). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution, PDB code: 5e4z:

Sodium binding site 1 out of 1 in 5e4z

Go back to Sodium Binding Sites List in 5e4z
Sodium binding site 1 out of 1 in the Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Methionine Gamma-Lyase From Citrobacter Freundii with C115A Substitution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na403

b:53.1
occ:1.00
 O A:HOH602 2.5 45.6 1.0
O A:HOH593 2.7 41.2 1.0
O A:HOH546 2.8 36.3 1.0
NE2 A:GLN303 3.3 50.0 1.0
OE1 A:GLN303 3.8 48.6 1.0
CD A:PRO309 3.9 36.4 1.0
CD A:GLN303 4.0 47.8 1.0
O A:SER307 4.1 39.7 1.0
CA A:LEU308 4.3 33.7 1.0
N A:PRO309 4.5 33.8 1.0
C A:SER307 4.5 35.6 1.0
N A:LEU308 4.7 34.7 1.0
C A:LEU308 4.7 33.8 1.0
CG A:PRO309 4.8 33.3 1.0
O A:MET306 4.9 39.4 1.0

Reference:

S.V.Revtovich, A.D.Nikulin, N.V.Anufrieva, E.A.Morozova, T.V.Demidkina. Crystal Structure of C115A Mutant L-Methionine Gamma-Lyase From Citrobacter Freundii To Be Published.
Page generated: Sun Aug 17 23:34:48 2025

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