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Sodium in PDB 5bn9: Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K.

Protein crystallography data

The structure of Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K., PDB code: 5bn9 was solved by D.Narayanan, R.A.Engh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.48 / 1.69
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.933, 63.210, 143.872, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 20.1

Other elements in 5bn9:

The structure of Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K. (pdb code 5bn9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K., PDB code: 5bn9:

Sodium binding site 1 out of 1 in 5bn9

Go back to Sodium Binding Sites List in 5bn9
Sodium binding site 1 out of 1 in the Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Adp Bound Human HSP70 Nbd Mutant R272K. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na405

b:36.0
occ:1.00
H72 A:EPE402 2.4 49.1 1.0
H82 A:EPE402 3.2 51.5 1.0
C7 A:EPE402 3.2 40.9 1.0
H71 A:EPE402 3.3 49.1 1.0
C8 A:EPE402 3.6 42.9 1.0
HO8 A:EPE402 3.6 60.3 1.0
O8 A:EPE402 3.8 50.2 1.0
H51 A:EPE402 4.2 49.8 1.0
N4 A:EPE402 4.4 38.8 1.0
H81 A:EPE402 4.6 51.5 1.0
H52 A:EPE402 4.7 49.8 1.0
C5 A:EPE402 4.7 41.5 1.0

Reference:

D.Narayanan, A.Pflug, T.Christopeit, P.Kyomuhendo, R.A.Engh. Nucleotide Binding to Variants of the HSP70-Nbd. To Be Published.
Page generated: Sun Aug 17 23:06:22 2025

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