Sodium in PDB 5b43: Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna

The structure of Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna, PDB code: 5b43 was solved by T.Yamano, H.Nishimasu, H.Hirano, T.Nakane, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	56.16 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	81.515, 136.732, 196.909, 90.00, 90.00, 90.00
R / Rfree (%)	22 / 25.7

The binding sites of Sodium atom in the Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna (pdb code 5b43). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna, PDB code: 5b43:

Sodium binding site 1 out of 1 in the Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Acidaminococcus Sp. CPF1 in Complex with Crrna and Target Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Na1404 b:57.0 occ:1.00 O A:LYS757 2.5 75.0 1.0 OP2 B:A-4 2.5 72.3 1.0 C A:LYS757 3.6 73.3 1.0 P B:A-4 3.8 74.2 1.0 O5' B:A-4 4.1 74.0 1.0 N A:LYS757 4.2 75.4 1.0 CA A:LYS757 4.3 74.0 1.0 OD1 A:ASN759 4.4 72.4 1.0 OD2 A:ASP749 4.5 84.9 1.0 C A:PRO758 4.5 67.2 1.0 C8 B:A-4 4.6 70.3 1.0 CB A:LYS757 4.6 72.7 1.0 N A:PRO758 4.6 70.9 1.0 N7 B:A-4 4.6 69.8 1.0 OP2 B:G-3 4.6 66.7 1.0 CA A:PRO758 4.7 69.6 1.0 OP2 B:U-5 4.7 93.8 1.0 O A:PRO758 4.7 66.0 1.0 C A:GLY756 4.8 77.4 1.0 C3' B:U-5 4.8 86.7 1.0 N A:ASN759 4.8 65.9 1.0 O3' B:U-5 4.8 88.0 1.0 OP1 B:A-4 4.8 74.5 1.0

T.Yamano, H.Nishimasu, B.Zetsche, H.Hirano, I.M.Slaymaker, Y.Li, I.Fedorova, T.Nakane, K.S.Makarova, E.V.Koonin, R.Ishitani, F.Zhang, O.Nureki. Crystal Structure of CPF1 in Complex with Guide Rna and Target Dna Cell V. 165 949 2016.
ISSN: ISSN 1097-4172
PubMed: 27114038
DOI: 10.1016/J.CELL.2016.04.003