Sodium in PDB 4zm0: Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat

The structure of Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat, PDB code: 4zm0 was solved by A.Garcia-Pino, R.Loris, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.10 / 3.17
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	165.980, 165.980, 156.880, 90.00, 90.00, 120.00
R / Rfree (%)	22.3 / 24.7

The binding sites of Sodium atom in the Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat (pdb code 4zm0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat, PDB code: 4zm0:

Sodium binding site 1 out of 1 in the Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Antitoxin Phd From Phage P1 in Complex with Its Operator Dna Inverted Repeat within 5.0Å range: probe atom residue distance (Å) B Occ E:Na101 b:0.2 occ:1.00 C5' F:DT5 3.8 1.0 1.0 C4' F:DT5 3.8 0.7 1.0 C5' E:DT14 3.9 0.2 1.0 O4' F:DT5 4.0 0.3 1.0 O3' E:DA13 4.1 0.0 1.0 O4' E:DT14 4.1 0.0 1.0 C4' E:DT14 4.4 0.4 1.0 O4' E:DA13 4.4 0.1 1.0 N2 F:DG4 4.4 0.9 1.0 C1' E:DA13 4.5 0.6 1.0 N3 E:DA13 4.6 0.6 1.0 N3 F:DG4 4.7 0.0 1.0 O5' E:DT14 4.8 0.9 1.0 C4' E:DA13 4.8 0.6 1.0

A.Garcia-Pino, S.De Gieter, A.Talavera, H.De Greve, R.G.Efremov, R.Loris. An Intrinsically Disordered Entropic Switch Determines Allostery in Phd-Doc Regulation. Nat.Chem.Biol. V. 12 490 2016.
ISSN: ESSN 1552-4469
PubMed: 27159580
DOI: 10.1038/NCHEMBIO.2078