Sodium in PDB 4z7c: Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32

All present enzymatic activity of Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32:
4.1.1.33;

The structure of Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32, PDB code: 4z7c was solved by H.Unno, A.Hattori, H.Hemmi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.26 / 2.20
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	152.130, 152.130, 108.582, 90.00, 90.00, 120.00
R / Rfree (%)	21.1 / 23.7

The binding sites of Sodium atom in the Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32 (pdb code 4z7c). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32, PDB code: 4z7c:

Sodium binding site 1 out of 1 in the Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Diphosphomevalonate Decarboxylase From the Sulfolobus Solfataricus, Space Group H32 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na402 b:59.0 occ:1.00 O A:LYS91 2.7 52.9 1.0 OE2 A:GLU93 2.9 58.7 1.0 OG1 A:THR50 2.9 56.1 1.0 O A:LYS48 3.3 46.9 1.0 N A:THR50 3.5 53.6 1.0 C A:LYS91 3.5 54.1 1.0 CB A:THR50 3.6 57.2 1.0 CD A:GLU93 3.8 58.9 1.0 C A:LYS48 3.9 46.6 1.0 CG A:LYS48 3.9 53.0 1.0 CB A:LYS91 4.0 58.7 1.0 N A:GLU93 4.0 51.1 1.0 C A:VAL49 4.0 50.7 1.0 CE A:LYS48 4.0 57.7 1.0 CG A:LYS91 4.0 60.4 1.0 CA A:VAL49 4.1 48.5 1.0 CG A:GLU93 4.1 55.7 1.0 CD A:LYS91 4.1 63.4 1.0 CA A:THR50 4.2 56.7 1.0 CD A:LYS48 4.2 54.7 1.0 CB A:GLU93 4.2 52.0 1.0 CB A:LYS48 4.3 49.3 1.0 N A:VAL49 4.3 46.2 1.0 N A:VAL92 4.3 51.9 1.0 CA A:LYS91 4.4 56.1 1.0 CA A:VAL92 4.4 51.1 1.0 C A:VAL92 4.5 51.2 1.0 CE A:LYS91 4.7 64.2 1.0 CA A:LYS48 4.7 47.5 1.0 CA A:GLU93 4.8 50.1 1.0 O A:VAL49 4.9 50.0 1.0 OE1 A:GLU93 4.9 61.0 1.0 O A:THR50 5.0 56.4 1.0

A.Hattori, H.Unno, S.Goda, K.Motoyama, T.Yoshimura, H.Hemmi. In Vivo Formation of the Protein Disulfide Bond That Enhances the Thermostability of Diphosphomevalonate Decarboxylase, An Intracellular Enzyme From the Hyperthermophilic Archaeon Sulfolobus Solfataricus J.Bacteriol. V. 197 3463 2015.
ISSN: ESSN 1098-5530
PubMed: 26303832
DOI: 10.1128/JB.00352-15