Sodium in PDB 4yvd: Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1)

The structure of Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1), PDB code: 4yvd was solved by A.Dong, H.Zeng, C.Xu, W.Tempel, Y.Li, H.He, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, J.Min, H.Wu, Structural Genomics Consortium(Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.55 / 1.70
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	158.330, 34.185, 48.818, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 22

The structure of Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1) also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1) (pdb code 4yvd). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1), PDB code: 4yvd:

Sodium binding site 1 out of 1 in the Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:25.0 occ:1.00 O A:TYR292 2.7 24.5 1.0 O A:HOH784 2.7 23.0 1.0 O A:HOH782 2.7 32.0 1.0 O A:ARG250 2.8 23.2 1.0 O A:HOH825 3.0 18.1 1.0 O A:HOH738 3.0 26.3 0.5 O A:HOH738 3.2 24.5 0.5 CA A:GLY293 3.7 19.2 1.0 C A:TYR292 3.8 23.9 1.0 C A:ARG250 3.9 24.2 1.0 N A:GLY293 4.2 20.0 1.0 O A:HOH740 4.3 32.5 1.0 CA A:GLY251 4.4 19.1 1.0 N A:GLY251 4.6 20.1 1.0 O A:HOH775 4.6 40.1 1.0 O A:HOH809 4.6 39.0 1.0 O A:HOH778 4.7 23.6 1.0 O A:ALA334 4.7 21.0 1.0 O A:HOH811 4.7 22.9 1.0 UNK A:UNX612 4.7 30.0 1.0 CB A:ARG250 4.8 22.6 1.0 O A:HOH813 4.8 26.7 1.0 CA A:ARG250 4.9 21.6 1.0 O A:HOH785 4.9 29.8 1.0 CB A:CYS209 5.0 23.5 1.0 C A:GLY293 5.0 21.3 1.0 O A:HOH761 5.0 43.6 1.0 O A:ARG208 5.0 27.7 1.0

H.Zeng, A.Dong, C.Xu, W.Tempel, Y.Li, H.He, C.Bountra, C.H.Arrowsmith, A.M.Edwards, P.J.Brown, J.Min, H.Wu, Structural Genomics Consortium (Sgc). Crytsal Structure of Human Pleiotropic Regulator 1 (PRL1). To Be Published.