Sodium in PDB 4ydr: Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii

All present enzymatic activity of Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii:
1.1.1.3;

The structure of Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii, PDB code: 4ydr was solved by M.Goto, K.Yoshimune, R.Kaneko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.50 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	57.818, 78.909, 65.814, 90.00, 105.79, 90.00
R / Rfree (%)	19.7 / 22.8

The binding sites of Sodium atom in the Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii (pdb code 4ydr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii, PDB code: 4ydr:

Sodium binding site 1 out of 1 in the Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Oxidized Homoserine Dehydrogenase of Sulfolobus Tokodaii within 5.0Å range: probe atom residue distance (Å) B Occ A:Na401 b:22.1 occ:1.00 O A:ASN230 2.1 27.6 1.0 C A:ASN230 3.2 30.5 1.0 O A:HOH517 4.0 31.8 1.0 CA A:ASN230 4.1 32.8 1.0 N A:GLU231 4.1 29.2 1.0 O A:HOH520 4.2 36.5 1.0 CA A:GLU231 4.2 28.9 1.0 O A:HOH532 4.3 35.3 1.0 OE2 A:GLU231 4.3 42.0 1.0 CB A:ASN230 4.5 34.2 1.0 CD A:GLU231 4.5 36.6 1.0 OE1 A:GLU231 4.5 37.7 1.0

Y.Tomonaga, R.Kaneko, M.Goto, T.Ohshima, K.Yoshimune. Structural Insight Into Activation of Homoserine Dehydrogenase From the Archaeon Sulfolobus Tokodaii Via Reduction Biochem Biophys Rep V. 3 14 2015.
ISSN: ESSN 2405-5808
DOI: 10.1016/J.BBREP.2015.07.006