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Sodium in PDB 4yd1: Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp
Enzymatic activity of Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp
All present enzymatic activity of Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp:
2.7.7.7;
2.7.7.7;
Protein crystallography data
The structure of Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp, PDB code: 4yd1
was solved by
A.F.Moon,
R.A.Gosavi,
T.A.Kunkel,
L.C.Pedersen,
K.Bebenek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 24.97 / 1.75 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 60.259, 69.042, 116.988, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 16.3 / 19 |
Other elements in 4yd1:
The structure of Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp also contains other interesting chemical elements:
| Magnesium | (Mg) | 3 atoms |
| Chlorine | (Cl) | 4 atoms |
Sodium Binding Sites:
The binding sites of Sodium atom in the Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp
(pdb code 4yd1). This binding sites where shown within
5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp, PDB code: 4yd1:
In total only one binding site of Sodium was determined in the Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp, PDB code: 4yd1:
Sodium binding site 1 out of 1 in 4yd1
Go back to
Sodium Binding Sites List in 4yd1
Sodium binding site 1 out
of 1 in the Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Sodium with other atoms in the Na binding
site number 1 of Ternary Complex of Human Dna Polymerase Mu with 2-Nt Gapped Dna Substrate and An Incoming Nonhydrolyzable Dumpnpp within 5.0Å range:
|
Reference:
A.F.Moon,
R.A.Gosavi,
T.A.Kunkel,
L.C.Pedersen,
K.Bebenek.
Creative Template-Dependent Synthesis By Human Polymerase Mu. Proc.Natl.Acad.Sci.Usa V. 112 E4530 2015.
ISSN: ESSN 1091-6490
PubMed: 26240373
DOI: 10.1073/PNAS.1505798112
Page generated: Sun Aug 17 22:35:45 2025
ISSN: ESSN 1091-6490
PubMed: 26240373
DOI: 10.1073/PNAS.1505798112
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