Sodium in PDB 4ycs: Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment)

The structure of Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment), PDB code: 4ycs was solved by K.Michalska, R.Wu, S.Clancy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.98
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	37.755, 119.501, 185.912, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 22.6

The binding sites of Sodium atom in the Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment) (pdb code 4ycs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment), PDB code: 4ycs:

Sodium binding site 1 out of 1 in the Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment) within 5.0Å range: probe atom residue distance (Å) B Occ D:Na202 b:45.0 occ:1.00 O D:LYS86 2.4 27.6 1.0 O D:HOH327 2.4 42.6 1.0 O E:GLN77 2.4 33.9 0.5 O E:GLN77 2.5 35.2 0.5 O3 D:GOL203 2.5 52.4 1.0 O E:HOH358 2.5 36.5 1.0 OE1 E:GLN77 2.6 26.9 0.5 CG E:GLN77 3.3 39.3 0.5 C E:GLN77 3.4 33.1 0.5 C E:GLN77 3.4 34.9 0.5 C D:LYS86 3.5 28.5 1.0 CD E:GLN77 3.6 27.9 0.5 NE2 E:GLN77 3.6 35.1 0.5 O D:HOH354 3.6 40.4 1.0 C3 D:GOL203 3.8 63.5 1.0 CD E:GLN77 3.9 40.7 0.5 N E:LYS78 4.1 36.2 1.0 CA E:LYS78 4.1 38.5 1.0 O E:LEU80 4.1 37.0 1.0 CA D:LYS86 4.2 28.3 1.0 N D:LYS86 4.2 25.9 1.0 CB E:GLN77 4.2 30.7 0.5 NE2 E:GLN77 4.3 26.3 0.5 CA E:GLN77 4.3 32.1 0.5 CA E:GLN77 4.3 35.7 0.5 CB E:GLN77 4.3 37.2 0.5 CB D:LYS86 4.4 32.6 1.0 O D:HOH329 4.4 38.6 1.0 N D:VAL87 4.5 27.0 1.0 CG E:GLN77 4.5 29.1 0.5 C E:LYS78 4.5 40.7 1.0 O E:LYS78 4.6 41.6 1.0 O2 D:GOL203 4.6 64.2 1.0 C2 D:GOL203 4.7 66.9 1.0 CA D:VAL87 4.7 29.7 1.0

K.Michalska, R.Wu, S.Clancy, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg). Crystal Structure of Putative Lipoprotein From Peptoclostridium Difficile 630 (Fragment) To Be Published.