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Sodium in PDB 4xr9: Crystal Structure of CALS8 From Micromonospora Echinospora Cocrystallized with Nad and Tdp-Glucose

Protein crystallography data

The structure of Crystal Structure of CALS8 From Micromonospora Echinospora Cocrystallized with Nad and Tdp-Glucose, PDB code: 4xr9 was solved by K.Michalska, L.Bigelow, M.Endres, G.Babnigg, C.A.Bingman, R.M.Yennamalli, S.Singh, M.K.Kharel, J.S.Thorson, G.N.Phillips Jr., A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), Enzyme Discovery For Naturalproduct Biosynthesis (Natpro), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.19 / 1.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 70.682, 87.040, 70.660, 90.00, 103.59, 90.00
R / Rfree (%) 17.1 / 20.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of CALS8 From Micromonospora Echinospora Cocrystallized with Nad and Tdp-Glucose (pdb code 4xr9). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of CALS8 From Micromonospora Echinospora Cocrystallized with Nad and Tdp-Glucose, PDB code: 4xr9:

Sodium binding site 1 out of 1 in 4xr9

Go back to Sodium Binding Sites List in 4xr9
Sodium binding site 1 out of 1 in the Crystal Structure of CALS8 From Micromonospora Echinospora Cocrystallized with Nad and Tdp-Glucose


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of CALS8 From Micromonospora Echinospora Cocrystallized with Nad and Tdp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na502

b:47.7
occ:1.00
O A:HOH639 2.2 34.0 1.0
O A:GLY243 2.2 33.5 1.0
O A:HOH627 2.2 46.9 1.0
C A:GLY243 3.4 32.7 1.0
CA A:GLY243 4.2 30.4 1.0
N A:VAL244 4.4 26.3 1.0
O B:HOH610 4.6 25.2 1.0
CA A:VAL244 4.6 25.5 1.0
O A:ARG453 4.7 43.4 1.0
C A:VAL244 4.9 27.1 1.0
N A:ASP245 5.0 23.4 1.0

Reference:

K.Michalska, L.Bigelow, M.Endres, G.Babnigg, C.A.Bingman, R.M.Yennamalli, S.Singh, M.K.Kharel, J.S.Thorson, G.N.Phillips Jr., A.Joachimiak. Crystal Structure of CALS8 From Micromonospora Echinospora To Be Published.
Page generated: Mon Oct 7 19:24:30 2024

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