Sodium in PDB 4xky: Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution

The structure of Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution, PDB code: 4xky was solved by N.J.Mank, A.K.Arnette, V.G.Klapper, M.Chruszcz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.62 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.903, 91.988, 208.559, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22.1

The binding sites of Sodium atom in the Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution (pdb code 4xky). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution, PDB code: 4xky:

Sodium binding site 1 out of 1 in the Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ D:Na401 b:43.3 occ:1.00 O D:VAL160 2.3 28.8 1.0 O D:HOH632 2.3 44.3 1.0 O D:ALA155 2.3 38.9 1.0 O D:ASN157 2.6 40.5 1.0 O D:HOH528 2.9 42.8 1.0 C D:VAL160 3.4 29.3 1.0 C D:ALA155 3.5 37.7 1.0 C D:ASN157 3.7 40.4 1.0 CA D:PRO158 4.0 40.9 1.0 CA D:ALA155 4.1 33.7 1.0 N D:VAL160 4.1 31.7 1.0 CA D:VAL160 4.2 29.3 1.0 C D:GLU156 4.3 44.9 1.0 C D:PRO158 4.3 38.7 1.0 CB D:VAL160 4.3 29.3 1.0 N D:PRO158 4.3 41.7 1.0 O D:PRO158 4.4 38.7 1.0 N D:ASN157 4.4 42.3 1.0 N D:ILE161 4.5 29.4 1.0 N D:GLU156 4.5 41.1 1.0 O D:GLU156 4.5 42.8 1.0 CB D:ALA155 4.6 33.7 1.0 CA D:ILE161 4.6 29.9 1.0 CA D:ASN157 4.7 40.9 1.0 CA D:GLU156 4.7 46.5 1.0 CD1 D:PHE186 4.8 30.6 1.0

N.Mank, A.Arnette, V.Klapper, L.Offermann, M.Chruszcz. Structure of Dihydrodipicolinate Synthase From the Commensal Bacterium Bacteroides Thetaiotaomicron at 2.1 A Resolution Acta Crystallogr.,Sect.F 2015.
ISSN: ESSN 2053-230X
DOI: 10.1107/S2053230X15004628