Sodium in PDB 4x7f: Crystal Structure of Norovirus Gii.10 P Domain in Complex with Nano-25

The structure of Crystal Structure of Norovirus Gii.10 P Domain in Complex with Nano-25, PDB code: 4x7f was solved by A.D.Koromyslova, G.S.Hansman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.59 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	49.280, 112.980, 142.890, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 18.7

The binding sites of Sodium atom in the Crystal Structure of Norovirus Gii.10 P Domain in Complex with Nano-25 (pdb code 4x7f). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Norovirus Gii.10 P Domain in Complex with Nano-25, PDB code: 4x7f:

Sodium binding site 1 out of 1 in the Crystal Structure of Norovirus Gii.10 P Domain in Complex with Nano-25


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Norovirus Gii.10 P Domain in Complex with Nano-25 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na601 b:53.0 occ:1.00 NE A:ARG501 3.3 47.1 1.0 OD1 A:ASP269 3.5 37.0 1.0 OD2 A:ASP269 3.7 35.6 1.0 NH2 A:ARG501 3.9 56.7 1.0 CG A:ASP269 3.9 31.6 1.0 O A:HOH718 3.9 46.3 1.0 CB A:THR267 3.9 22.9 1.0 CZ A:ARG501 4.0 54.9 1.0 CG2 A:THR267 4.0 22.1 1.0 CG A:ARG501 4.1 34.0 1.0 OG1 A:THR267 4.1 21.5 1.0 CD A:ARG501 4.1 41.9 1.0

A.D.Koromyslova, G.S.Hansman. Nanobody Binding to A Conserved Epitope Promoted Human Norovirus Particle Disassembly. J.Virol. 2014.
ISSN: ESSN 1098-5514
PubMed: 25520510
DOI: 10.1128/JVI.03176-14